miRNA display CGI


Results 1 - 20 of 134 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21398 5' -64.1 NC_004812.1 + 523 0.69 0.411775
Target:  5'- -----cGG-GGCGGgCCCGCgCGCCCGg -3'
miRNA:   3'- cacaguCCaCCGCCaGGGCG-GCGGGC- -5'
21398 5' -64.1 NC_004812.1 + 16721 0.7 0.356986
Target:  5'- -cG-CGGGgc-CGGUCCCGCuCGCCCGu -3'
miRNA:   3'- caCaGUCCaccGCCAGGGCG-GCGGGC- -5'
21398 5' -64.1 NC_004812.1 + 128495 0.7 0.356986
Target:  5'- -cGUCGGGcgGGcCGGUCCaguuGCCgGCCCa -3'
miRNA:   3'- caCAGUCCa-CC-GCCAGGg---CGG-CGGGc -5'
21398 5' -64.1 NC_004812.1 + 9995 0.7 0.364493
Target:  5'- cUGUCGcGUGGaggaGGUgCUGCCGCCCc -3'
miRNA:   3'- cACAGUcCACCg---CCAgGGCGGCGGGc -5'
21398 5' -64.1 NC_004812.1 + 78512 0.69 0.379831
Target:  5'- cGUGUcCGGGUGGCGG-CCgaGCaGCUCGg -3'
miRNA:   3'- -CACA-GUCCACCGCCaGGg-CGgCGGGC- -5'
21398 5' -64.1 NC_004812.1 + 126177 0.69 0.395595
Target:  5'- ---cCAGGUucgcaccccGGCGcUCCCGCgGCCCGg -3'
miRNA:   3'- cacaGUCCA---------CCGCcAGGGCGgCGGGC- -5'
21398 5' -64.1 NC_004812.1 + 104512 0.69 0.395595
Target:  5'- -cG-CGGGacgGGCGGUCgUCGCgCGCCCGc -3'
miRNA:   3'- caCaGUCCa--CCGCCAG-GGCG-GCGGGC- -5'
21398 5' -64.1 NC_004812.1 + 72058 0.69 0.398798
Target:  5'- -gGUCGGG-GGCGcugggggcggcggcuGUUUCGCCGCCCc -3'
miRNA:   3'- caCAGUCCaCCGC---------------CAGGGCGGCGGGc -5'
21398 5' -64.1 NC_004812.1 + 7998 0.69 0.403634
Target:  5'- -gGUCAGGggGGCGcUCCCGCgacCCCGg -3'
miRNA:   3'- caCAGUCCa-CCGCcAGGGCGgc-GGGC- -5'
21398 5' -64.1 NC_004812.1 + 6348 0.7 0.349588
Target:  5'- -aG-CAGGgGGCGGcaggCgCGCCGCCCGc -3'
miRNA:   3'- caCaGUCCaCCGCCa---GgGCGGCGGGC- -5'
21398 5' -64.1 NC_004812.1 + 4397 0.7 0.335123
Target:  5'- -cGUCGcccgGGUGGUCCCGCCgcacucgccuGCCCGa -3'
miRNA:   3'- caCAGUcca-CCGCCAGGGCGG----------CGGGC- -5'
21398 5' -64.1 NC_004812.1 + 119350 0.7 0.3211
Target:  5'- -cGUCccuGGcgGGCGGcgcgCCUGCCGCCCc -3'
miRNA:   3'- caCAGu--CCa-CCGCCa---GGGCGGCGGGc -5'
21398 5' -64.1 NC_004812.1 + 69605 0.78 0.098763
Target:  5'- gGUGgcccgCGGGUGGUGGUgcgugccCCCGCCGCuCCGg -3'
miRNA:   3'- -CACa----GUCCACCGCCA-------GGGCGGCG-GGC- -5'
21398 5' -64.1 NC_004812.1 + 133068 0.76 0.150313
Target:  5'- -gGgcgCGGGgGGCGGUCCCGCC-CCCa -3'
miRNA:   3'- caCa--GUCCaCCGCCAGGGCGGcGGGc -5'
21398 5' -64.1 NC_004812.1 + 73236 0.75 0.169501
Target:  5'- -gGUCGGGcgGGCGG-CCCGCC-CCCa -3'
miRNA:   3'- caCAGUCCa-CCGCCaGGGCGGcGGGc -5'
21398 5' -64.1 NC_004812.1 + 140012 0.74 0.190851
Target:  5'- -cGUUAuGGUGcuGCGGcCCUGCCGCCCGc -3'
miRNA:   3'- caCAGU-CCAC--CGCCaGGGCGGCGGGC- -5'
21398 5' -64.1 NC_004812.1 + 50643 0.73 0.229911
Target:  5'- cUGUgGGG-GGCGGggcccggcgaCUCGCCGCCCGa -3'
miRNA:   3'- cACAgUCCaCCGCCa---------GGGCGGCGGGC- -5'
21398 5' -64.1 NC_004812.1 + 3250 0.71 0.300898
Target:  5'- -cGcCAGG-GGCGcccgcgccCCCGCCGCCCGa -3'
miRNA:   3'- caCaGUCCaCCGCca------GGGCGGCGGGC- -5'
21398 5' -64.1 NC_004812.1 + 128968 0.71 0.307521
Target:  5'- -gGUCGGGcccggcgGGCGGUCgCGCCGUCa- -3'
miRNA:   3'- caCAGUCCa------CCGCCAGgGCGGCGGgc -5'
21398 5' -64.1 NC_004812.1 + 74364 0.7 0.3211
Target:  5'- -gGgcgCGGGcGGCGGggUCCCGCCcgcGCCCGu -3'
miRNA:   3'- caCa--GUCCaCCGCC--AGGGCGG---CGGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.