miRNA display CGI


Results 1 - 20 of 134 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21398 5' -64.1 NC_004812.1 + 125998 1.08 0.00075
Target:  5'- uGUGUCAGGUGGCGGUCCCGCCGCCCGa -3'
miRNA:   3'- -CACAGUCCACCGCCAGGGCGGCGGGC- -5'
21398 5' -64.1 NC_004812.1 + 101964 0.8 0.079028
Target:  5'- -cGUCAGGggccGCGGacgCCCGCCGCCCGc -3'
miRNA:   3'- caCAGUCCac--CGCCa--GGGCGGCGGGC- -5'
21398 5' -64.1 NC_004812.1 + 69605 0.78 0.098763
Target:  5'- gGUGgcccgCGGGUGGUGGUgcgugccCCCGCCGCuCCGg -3'
miRNA:   3'- -CACa----GUCCACCGCCA-------GGGCGGCG-GGC- -5'
21398 5' -64.1 NC_004812.1 + 82238 0.76 0.14672
Target:  5'- ---aCGGGcgcgGGCGGgacCCCGCCGCCCGc -3'
miRNA:   3'- cacaGUCCa---CCGCCa--GGGCGGCGGGC- -5'
21398 5' -64.1 NC_004812.1 + 133068 0.76 0.150313
Target:  5'- -gGgcgCGGGgGGCGGUCCCGCC-CCCa -3'
miRNA:   3'- caCa--GUCCaCCGCCAGGGCGGcGGGc -5'
21398 5' -64.1 NC_004812.1 + 7560 0.76 0.150313
Target:  5'- -gGgcgCGGGgGGCGGUCCCGCC-CCCa -3'
miRNA:   3'- caCa--GUCCaCCGCCAGGGCGGcGGGc -5'
21398 5' -64.1 NC_004812.1 + 73236 0.75 0.169501
Target:  5'- -gGUCGGGcgGGCGG-CCCGCC-CCCa -3'
miRNA:   3'- caCAGUCCa-CCGCCaGGGCGGcGGGc -5'
21398 5' -64.1 NC_004812.1 + 13363 0.74 0.182041
Target:  5'- -gGUCGGGggugcGGCGGUCCCuuCCGCgCCGg -3'
miRNA:   3'- caCAGUCCa----CCGCCAGGGc-GGCG-GGC- -5'
21398 5' -64.1 NC_004812.1 + 13330 0.74 0.182041
Target:  5'- -gGUCGGGggugcGGCGGUCCCuuCCGCgCCGg -3'
miRNA:   3'- caCAGUCCa----CCGCCAGGGc-GGCG-GGC- -5'
21398 5' -64.1 NC_004812.1 + 18825 0.74 0.1864
Target:  5'- uGUGcggCGGGcGGCGGUugCgCGCCGCCCGg -3'
miRNA:   3'- -CACa--GUCCaCCGCCA--GgGCGGCGGGC- -5'
21398 5' -64.1 NC_004812.1 + 140012 0.74 0.190851
Target:  5'- -cGUUAuGGUGcuGCGGcCCUGCCGCCCGc -3'
miRNA:   3'- caCAGU-CCAC--CGCCaGGGCGGCGGGC- -5'
21398 5' -64.1 NC_004812.1 + 137174 0.74 0.190851
Target:  5'- gGUG-CGGGaGGCGGUCCUGCgGCCgCGc -3'
miRNA:   3'- -CACaGUCCaCCGCCAGGGCGgCGG-GC- -5'
21398 5' -64.1 NC_004812.1 + 20681 0.74 0.195395
Target:  5'- ----gAGGUGGCGGaCgCCGCCGCCUGc -3'
miRNA:   3'- cacagUCCACCGCCaG-GGCGGCGGGC- -5'
21398 5' -64.1 NC_004812.1 + 95572 0.74 0.204767
Target:  5'- ------cGUGGCGGUCUCGCCGCUCGu -3'
miRNA:   3'- cacagucCACCGCCAGGGCGGCGGGC- -5'
21398 5' -64.1 NC_004812.1 + 1988 0.73 0.219554
Target:  5'- -gGagGGGUGGCgGGUCCCGCCGgCgGu -3'
miRNA:   3'- caCagUCCACCG-CCAGGGCGGCgGgC- -5'
21398 5' -64.1 NC_004812.1 + 50643 0.73 0.229911
Target:  5'- cUGUgGGG-GGCGGggcccggcgaCUCGCCGCCCGa -3'
miRNA:   3'- cACAgUCCaCCGCCa---------GGGCGGCGGGC- -5'
21398 5' -64.1 NC_004812.1 + 60807 0.72 0.274896
Target:  5'- -cGUCGGGcggGGCGGUCacguucaccagcaCCGCC-CCCGg -3'
miRNA:   3'- caCAGUCCa--CCGCCAG-------------GGCGGcGGGC- -5'
21398 5' -64.1 NC_004812.1 + 14551 0.71 0.287983
Target:  5'- -cG-CGGG-GGCGGgCUCGUCGCCCGg -3'
miRNA:   3'- caCaGUCCaCCGCCaGGGCGGCGGGC- -5'
21398 5' -64.1 NC_004812.1 + 34151 0.71 0.300898
Target:  5'- -cGcCAGG-GGCGcccgcgccCCCGCCGCCCGa -3'
miRNA:   3'- caCaGUCCaCCGCca------GGGCGGCGGGC- -5'
21398 5' -64.1 NC_004812.1 + 3250 0.71 0.300898
Target:  5'- -cGcCAGG-GGCGcccgcgccCCCGCCGCCCGa -3'
miRNA:   3'- caCaGUCCaCCGCca------GGGCGGCGGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.