miRNA display CGI


Results 1 - 20 of 364 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21399 3' -55.6 NC_004812.1 + 41631 0.66 0.89925
Target:  5'- cACCcUG-ACGUcaGCGCCgaGGCCGACGu -3'
miRNA:   3'- cUGGuACuUGCG--CGUGGa-CCGGUUGC- -5'
21399 3' -55.6 NC_004812.1 + 134339 0.66 0.911704
Target:  5'- cGCUccGAaagACGCGCGCCccgGGCCcggAACGa -3'
miRNA:   3'- cUGGuaCU---UGCGCGUGGa--CCGG---UUGC- -5'
21399 3' -55.6 NC_004812.1 + 83733 0.66 0.911704
Target:  5'- uGCCggGGACGCGgGCCcGGCUgccgccaggGACGc -3'
miRNA:   3'- cUGGuaCUUGCGCgUGGaCCGG---------UUGC- -5'
21399 3' -55.6 NC_004812.1 + 47989 0.66 0.928592
Target:  5'- cGGCCAgc-ACGCGCGCCUcguGGUgcACGa -3'
miRNA:   3'- -CUGGUacuUGCGCGUGGA---CCGguUGC- -5'
21399 3' -55.6 NC_004812.1 + 141403 0.66 0.905595
Target:  5'- cGCCGUGcuggaGCGCGCCUGcCgCAGCGu -3'
miRNA:   3'- cUGGUACuug--CGCGUGGACcG-GUUGC- -5'
21399 3' -55.6 NC_004812.1 + 32978 0.66 0.89925
Target:  5'- -uUCAUGGucuCGCGguCCguccGGCCGGCGu -3'
miRNA:   3'- cuGGUACUu--GCGCguGGa---CCGGUUGC- -5'
21399 3' -55.6 NC_004812.1 + 152181 0.66 0.905595
Target:  5'- cACCGUGGcccGCGCcgugccGCACCUGGgCuACGc -3'
miRNA:   3'- cUGGUACU---UGCG------CGUGGACCgGuUGC- -5'
21399 3' -55.6 NC_004812.1 + 130839 0.66 0.905595
Target:  5'- cGCCG-GGGCGC-CGCCcggGGUCGGCGg -3'
miRNA:   3'- cUGGUaCUUGCGcGUGGa--CCGGUUGC- -5'
21399 3' -55.6 NC_004812.1 + 34320 0.66 0.905595
Target:  5'- -cCCGUc-ACGCGCGCC-GGCCAGgCGc -3'
miRNA:   3'- cuGGUAcuUGCGCGUGGaCCGGUU-GC- -5'
21399 3' -55.6 NC_004812.1 + 145914 0.66 0.89925
Target:  5'- -cCCGUGGACGCccccguGUACCUGGUgaCGugGu -3'
miRNA:   3'- cuGGUACUUGCG------CGUGGACCG--GUugC- -5'
21399 3' -55.6 NC_004812.1 + 31013 0.66 0.89925
Target:  5'- aGACCAcGAGgGCGUGCa--GCCGGCGg -3'
miRNA:   3'- -CUGGUaCUUgCGCGUGgacCGGUUGC- -5'
21399 3' -55.6 NC_004812.1 + 125028 0.66 0.89925
Target:  5'- gGACCcggGGACGCGCuccccucgcgccGCCcgGGCgCGGCGu -3'
miRNA:   3'- -CUGGua-CUUGCGCG------------UGGa-CCG-GUUGC- -5'
21399 3' -55.6 NC_004812.1 + 85244 0.66 0.89925
Target:  5'- -gUCGUGggUGaCGCAggacgagCUGGCCAGCGu -3'
miRNA:   3'- cuGGUACuuGC-GCGUg------GACCGGUUGC- -5'
21399 3' -55.6 NC_004812.1 + 121192 0.66 0.911704
Target:  5'- -cCCAgcAGCGCGC-CCUGGUCGAa- -3'
miRNA:   3'- cuGGUacUUGCGCGuGGACCGGUUgc -5'
21399 3' -55.6 NC_004812.1 + 44269 0.66 0.905595
Target:  5'- aGCCGcUGGucGCGCGCgaccGCCUccgcGGCCAGCc -3'
miRNA:   3'- cUGGU-ACU--UGCGCG----UGGA----CCGGUUGc -5'
21399 3' -55.6 NC_004812.1 + 92571 0.66 0.89925
Target:  5'- cGACgGUGAACuGC-CGCCUGGCgCucCGg -3'
miRNA:   3'- -CUGgUACUUG-CGcGUGGACCG-GuuGC- -5'
21399 3' -55.6 NC_004812.1 + 41370 0.66 0.911704
Target:  5'- cACCAccgGGACGuCGUcuucuACCUcacGGCCGACGg -3'
miRNA:   3'- cUGGUa--CUUGC-GCG-----UGGA---CCGGUUGC- -5'
21399 3' -55.6 NC_004812.1 + 64726 0.66 0.89925
Target:  5'- aGGCCGcGGGCauGCGCGCCcccgGGCCGuacuCGa -3'
miRNA:   3'- -CUGGUaCUUG--CGCGUGGa---CCGGUu---GC- -5'
21399 3' -55.6 NC_004812.1 + 73488 0.66 0.897301
Target:  5'- uGCCGUGGcgccaguccgccagGCGCGUGCCgaacaggaGGCCggUGg -3'
miRNA:   3'- cUGGUACU--------------UGCGCGUGGa-------CCGGuuGC- -5'
21399 3' -55.6 NC_004812.1 + 117555 0.66 0.89925
Target:  5'- gGGCCccagGUGAGCGCGCggGCCgaaaugGGCCcccCGa -3'
miRNA:   3'- -CUGG----UACUUGCGCG--UGGa-----CCGGuu-GC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.