miRNA display CGI


Results 1 - 20 of 364 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21399 3' -55.6 NC_004812.1 + 123647 1.09 0.002959
Target:  5'- aGACCAUGAACGCGCACCUGGCCAACGa -3'
miRNA:   3'- -CUGGUACUUGCGCGUGGACCGGUUGC- -5'
21399 3' -55.6 NC_004812.1 + 143544 0.81 0.201948
Target:  5'- cGCCGUGAACgaggcggcccugGCGCGCCUGGgCGACGa -3'
miRNA:   3'- cUGGUACUUG------------CGCGUGGACCgGUUGC- -5'
21399 3' -55.6 NC_004812.1 + 108667 0.8 0.23415
Target:  5'- gGAuCCggGAACGCGCGCCgGGCCGGCc -3'
miRNA:   3'- -CU-GGuaCUUGCGCGUGGaCCGGUUGc -5'
21399 3' -55.6 NC_004812.1 + 76544 0.79 0.277052
Target:  5'- gGGgCGUGGACGCGgGCCUcGGCCGGCa -3'
miRNA:   3'- -CUgGUACUUGCGCgUGGA-CCGGUUGc -5'
21399 3' -55.6 NC_004812.1 + 3497 0.79 0.290411
Target:  5'- gGGCCGcGGGCGCGgGCCcggGGCCGGCGg -3'
miRNA:   3'- -CUGGUaCUUGCGCgUGGa--CCGGUUGC- -5'
21399 3' -55.6 NC_004812.1 + 129005 0.79 0.290411
Target:  5'- gGGCCGcGGGCGCGgGCCcggGGCCGGCGg -3'
miRNA:   3'- -CUGGUaCUUGCGCgUGGa--CCGGUUGC- -5'
21399 3' -55.6 NC_004812.1 + 90203 0.78 0.30427
Target:  5'- cGACC-UGGA-GCGCACCgUGGCCGACa -3'
miRNA:   3'- -CUGGuACUUgCGCGUGG-ACCGGUUGc -5'
21399 3' -55.6 NC_004812.1 + 36802 0.78 0.30427
Target:  5'- cGCCAUGAGCGCGUACgUGagcguguucucGCCGGCGg -3'
miRNA:   3'- cUGGUACUUGCGCGUGgAC-----------CGGUUGC- -5'
21399 3' -55.6 NC_004812.1 + 88288 0.78 0.30427
Target:  5'- cGACCcagagcgGggUGUGCaACCUGGCCAGCGu -3'
miRNA:   3'- -CUGGua-----CuuGCGCG-UGGACCGGUUGC- -5'
21399 3' -55.6 NC_004812.1 + 35422 0.78 0.318631
Target:  5'- cGACCA-GGGCGCGCugCUGGgCGGCc -3'
miRNA:   3'- -CUGGUaCUUGCGCGugGACCgGUUGc -5'
21399 3' -55.6 NC_004812.1 + 4521 0.78 0.318631
Target:  5'- cGACCA-GGGCGCGCugCUGGgCGGCc -3'
miRNA:   3'- -CUGGUaCUUGCGCGugGACCgGUUGc -5'
21399 3' -55.6 NC_004812.1 + 55984 0.78 0.318631
Target:  5'- cGCCGU--GCGCGCGauCCUGGCCGGCGc -3'
miRNA:   3'- cUGGUAcuUGCGCGU--GGACCGGUUGC- -5'
21399 3' -55.6 NC_004812.1 + 79470 0.76 0.381082
Target:  5'- cGGCCGa-GACGCgGCGCCUGGCCGAgGa -3'
miRNA:   3'- -CUGGUacUUGCG-CGUGGACCGGUUgC- -5'
21399 3' -55.6 NC_004812.1 + 81232 0.76 0.388601
Target:  5'- cGACCGUGAcgaacGCGUGCACCucgcggaggacggUGGCCAucACGu -3'
miRNA:   3'- -CUGGUACU-----UGCGCGUGG-------------ACCGGU--UGC- -5'
21399 3' -55.6 NC_004812.1 + 139960 0.76 0.389442
Target:  5'- gGGCCggGAGCGCGCgGCgUGGCgGACGu -3'
miRNA:   3'- -CUGGuaCUUGCGCG-UGgACCGgUUGC- -5'
21399 3' -55.6 NC_004812.1 + 4866 0.76 0.397921
Target:  5'- cGGCCGUGAagcggcccgugGCGuCGCGCCcGGCCAcgGCGg -3'
miRNA:   3'- -CUGGUACU-----------UGC-GCGUGGaCCGGU--UGC- -5'
21399 3' -55.6 NC_004812.1 + 130374 0.76 0.397921
Target:  5'- cGGCCGUGAagcggcccgugGCGuCGCGCCcGGCCAcgGCGg -3'
miRNA:   3'- -CUGGUACU-----------UGC-GCGUGGaCCGGU--UGC- -5'
21399 3' -55.6 NC_004812.1 + 62468 0.76 0.397921
Target:  5'- uGGCCcagGcGCGCGCGCCUcugGGCCGGCGc -3'
miRNA:   3'- -CUGGua-CuUGCGCGUGGA---CCGGUUGC- -5'
21399 3' -55.6 NC_004812.1 + 63026 0.76 0.41523
Target:  5'- -uCCGcGAGCGCGCGCUUGGCCccCGg -3'
miRNA:   3'- cuGGUaCUUGCGCGUGGACCGGuuGC- -5'
21399 3' -55.6 NC_004812.1 + 154243 0.76 0.424056
Target:  5'- gGACCGcGAcgccGCGCGCGCCgGGcCCGACGc -3'
miRNA:   3'- -CUGGUaCU----UGCGCGUGGaCC-GGUUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.