miRNA display CGI


Results 1 - 20 of 364 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21399 3' -55.6 NC_004812.1 + 15411 0.73 0.557793
Target:  5'- gGGCCGUcGAGCGCGcCGCCccgGGCCucCGg -3'
miRNA:   3'- -CUGGUA-CUUGCGC-GUGGa--CCGGuuGC- -5'
21399 3' -55.6 NC_004812.1 + 145442 0.75 0.466045
Target:  5'- cGACC-UGAugGCaccgaccuacauuCGCCUGGCCGACGa -3'
miRNA:   3'- -CUGGuACUugCGc------------GUGGACCGGUUGC- -5'
21399 3' -55.6 NC_004812.1 + 81370 0.75 0.469799
Target:  5'- cGGCCGUGAggGCGCGCuucguguCCUGGUaGGCGg -3'
miRNA:   3'- -CUGGUACU--UGCGCGu------GGACCGgUUGC- -5'
21399 3' -55.6 NC_004812.1 + 34633 0.75 0.479249
Target:  5'- gGGCCGUcGAACGUGCACacccgGGCCAcCGg -3'
miRNA:   3'- -CUGGUA-CUUGCGCGUGga---CCGGUuGC- -5'
21399 3' -55.6 NC_004812.1 + 30846 0.74 0.508136
Target:  5'- cGCCcgGGG-GCGCGCCcGGCCAugGg -3'
miRNA:   3'- cUGGuaCUUgCGCGUGGaCCGGUugC- -5'
21399 3' -55.6 NC_004812.1 + 94269 0.74 0.508136
Target:  5'- cGCCGcGGGCGCGCGCCgcGGCCcgGGCGu -3'
miRNA:   3'- cUGGUaCUUGCGCGUGGa-CCGG--UUGC- -5'
21399 3' -55.6 NC_004812.1 + 143108 0.74 0.517929
Target:  5'- cGCCGUGGGCccCGCGCCUGGCgCuGACGg -3'
miRNA:   3'- cUGGUACUUGc-GCGUGGACCG-G-UUGC- -5'
21399 3' -55.6 NC_004812.1 + 33459 0.73 0.547734
Target:  5'- cACCAUGGACgGCGC-CCUgcGGCgGACGg -3'
miRNA:   3'- cUGGUACUUG-CGCGuGGA--CCGgUUGC- -5'
21399 3' -55.6 NC_004812.1 + 8306 0.73 0.557793
Target:  5'- aGGCCAgcGAGCGCaGCAgCgGGCCGGCGc -3'
miRNA:   3'- -CUGGUa-CUUGCG-CGUgGaCCGGUUGC- -5'
21399 3' -55.6 NC_004812.1 + 52234 0.75 0.45119
Target:  5'- gGGCCAUGuAGCGUaucaucucccGCGCCUGcGCCAGCu -3'
miRNA:   3'- -CUGGUAC-UUGCG----------CGUGGAC-CGGUUGc -5'
21399 3' -55.6 NC_004812.1 + 40224 0.75 0.45119
Target:  5'- cGACC----GCcCGCGCCUGGCCGGCGg -3'
miRNA:   3'- -CUGGuacuUGcGCGUGGACCGGUUGC- -5'
21399 3' -55.6 NC_004812.1 + 15211 0.75 0.432993
Target:  5'- gGACUuu--GCGCGCgGCCUGGCCGACu -3'
miRNA:   3'- -CUGGuacuUGCGCG-UGGACCGGUUGc -5'
21399 3' -55.6 NC_004812.1 + 129005 0.79 0.290411
Target:  5'- gGGCCGcGGGCGCGgGCCcggGGCCGGCGg -3'
miRNA:   3'- -CUGGUaCUUGCGCgUGGa--CCGGUUGC- -5'
21399 3' -55.6 NC_004812.1 + 36802 0.78 0.30427
Target:  5'- cGCCAUGAGCGCGUACgUGagcguguucucGCCGGCGg -3'
miRNA:   3'- cUGGUACUUGCGCGUGgAC-----------CGGUUGC- -5'
21399 3' -55.6 NC_004812.1 + 88288 0.78 0.30427
Target:  5'- cGACCcagagcgGggUGUGCaACCUGGCCAGCGu -3'
miRNA:   3'- -CUGGua-----CuuGCGCG-UGGACCGGUUGC- -5'
21399 3' -55.6 NC_004812.1 + 4521 0.78 0.318631
Target:  5'- cGACCA-GGGCGCGCugCUGGgCGGCc -3'
miRNA:   3'- -CUGGUaCUUGCGCGugGACCgGUUGc -5'
21399 3' -55.6 NC_004812.1 + 81232 0.76 0.388601
Target:  5'- cGACCGUGAcgaacGCGUGCACCucgcggaggacggUGGCCAucACGu -3'
miRNA:   3'- -CUGGUACU-----UGCGCGUGG-------------ACCGGU--UGC- -5'
21399 3' -55.6 NC_004812.1 + 62468 0.76 0.397921
Target:  5'- uGGCCcagGcGCGCGCGCCUcugGGCCGGCGc -3'
miRNA:   3'- -CUGGua-CuUGCGCGUGGA---CCGGUUGC- -5'
21399 3' -55.6 NC_004812.1 + 130374 0.76 0.397921
Target:  5'- cGGCCGUGAagcggcccgugGCGuCGCGCCcGGCCAcgGCGg -3'
miRNA:   3'- -CUGGUACU-----------UGC-GCGUGGaCCGGU--UGC- -5'
21399 3' -55.6 NC_004812.1 + 154243 0.76 0.424056
Target:  5'- gGACCGcGAcgccGCGCGCGCCgGGcCCGACGc -3'
miRNA:   3'- -CUGGUaCU----UGCGCGUGGaCC-GGUUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.