miRNA display CGI


Results 1 - 20 of 364 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21399 3' -55.6 NC_004812.1 + 99 0.71 0.6601
Target:  5'- gGGCCG-GGGCGCGCGCggGGCCGGg- -3'
miRNA:   3'- -CUGGUaCUUGCGCGUGgaCCGGUUgc -5'
21399 3' -55.6 NC_004812.1 + 213 0.66 0.928592
Target:  5'- gGGCCcgGGuCGCGCAgcCCcGGCCcccGCGg -3'
miRNA:   3'- -CUGGuaCUuGCGCGU--GGaCCGGu--UGC- -5'
21399 3' -55.6 NC_004812.1 + 2364 0.66 0.928592
Target:  5'- gGGCCcgGcGCGCGCGgCgucgcGGuCCAGCGc -3'
miRNA:   3'- -CUGGuaCuUGCGCGUgGa----CC-GGUUGC- -5'
21399 3' -55.6 NC_004812.1 + 2524 0.68 0.823684
Target:  5'- cGGCCGUcGAGCGCGgGCagcacGGCgCGGCGg -3'
miRNA:   3'- -CUGGUA-CUUGCGCgUGga---CCG-GUUGC- -5'
21399 3' -55.6 NC_004812.1 + 2723 0.7 0.73965
Target:  5'- aGGCCAgcacGGcgcggcgcaggucGCGCGCGgCgGGCCAGCGg -3'
miRNA:   3'- -CUGGUa---CU-------------UGCGCGUgGaCCGGUUGC- -5'
21399 3' -55.6 NC_004812.1 + 2791 0.72 0.629281
Target:  5'- cAUCGUGGGCGUGCA---GGCCAACGg -3'
miRNA:   3'- cUGGUACUUGCGCGUggaCCGGUUGC- -5'
21399 3' -55.6 NC_004812.1 + 3267 0.68 0.848515
Target:  5'- gGGCCGc-AGCGCGCggcgaGCgaGGCCAGCGc -3'
miRNA:   3'- -CUGGUacUUGCGCG-----UGgaCCGGUUGC- -5'
21399 3' -55.6 NC_004812.1 + 3497 0.79 0.290411
Target:  5'- gGGCCGcGGGCGCGgGCCcggGGCCGGCGg -3'
miRNA:   3'- -CUGGUaCUUGCGCgUGGa--CCGGUUGC- -5'
21399 3' -55.6 NC_004812.1 + 3721 0.67 0.864092
Target:  5'- cGCCGgcggaGCGCACCUGGC--GCGg -3'
miRNA:   3'- cUGGUacuugCGCGUGGACCGguUGC- -5'
21399 3' -55.6 NC_004812.1 + 4285 0.66 0.917574
Target:  5'- cGCCAgcagGGgcgcguACGCGCGCCgcaGGCUggUGa -3'
miRNA:   3'- cUGGUa---CU------UGCGCGUGGa--CCGGuuGC- -5'
21399 3' -55.6 NC_004812.1 + 4373 0.73 0.588253
Target:  5'- --aCAUG-GCGCGCGcCCUGGCCGagGCGu -3'
miRNA:   3'- cugGUACuUGCGCGU-GGACCGGU--UGC- -5'
21399 3' -55.6 NC_004812.1 + 4521 0.78 0.318631
Target:  5'- cGACCA-GGGCGCGCugCUGGgCGGCc -3'
miRNA:   3'- -CUGGUaCUUGCGCGugGACCgGUUGc -5'
21399 3' -55.6 NC_004812.1 + 4672 0.67 0.892671
Target:  5'- cGGCCGU---CGCGCGCCgGcGCCGAgGg -3'
miRNA:   3'- -CUGGUAcuuGCGCGUGGaC-CGGUUgC- -5'
21399 3' -55.6 NC_004812.1 + 4731 0.66 0.917574
Target:  5'- cGCCGUaGAGCaCGCGCCccggGGgCGGCGg -3'
miRNA:   3'- cUGGUA-CUUGcGCGUGGa---CCgGUUGC- -5'
21399 3' -55.6 NC_004812.1 + 4866 0.76 0.397921
Target:  5'- cGGCCGUGAagcggcccgugGCGuCGCGCCcGGCCAcgGCGg -3'
miRNA:   3'- -CUGGUACU-----------UGC-GCGUGGaCCGGU--UGC- -5'
21399 3' -55.6 NC_004812.1 + 5245 0.7 0.720884
Target:  5'- cGGCCGUcGGgGCGCGCCgagucGGCCGccGCGg -3'
miRNA:   3'- -CUGGUAcUUgCGCGUGGa----CCGGU--UGC- -5'
21399 3' -55.6 NC_004812.1 + 5331 0.66 0.905595
Target:  5'- cGCCG-GGGCGC-CGCCcggGGUCGGCGg -3'
miRNA:   3'- cUGGUaCUUGCGcGUGGa--CCGGUUGC- -5'
21399 3' -55.6 NC_004812.1 + 5460 0.66 0.917574
Target:  5'- cACCAUGGAgGC-CAgCagGGCCAGCu -3'
miRNA:   3'- cUGGUACUUgCGcGUgGa-CCGGUUGc -5'
21399 3' -55.6 NC_004812.1 + 5869 0.66 0.928592
Target:  5'- --aCAUGGGCGCGgGCCggggGGCgCGggcGCGg -3'
miRNA:   3'- cugGUACUUGCGCgUGGa---CCG-GU---UGC- -5'
21399 3' -55.6 NC_004812.1 + 7052 0.7 0.7308
Target:  5'- cGACUGUGGAC-CGCGCCagGGCCGcuccagGCGc -3'
miRNA:   3'- -CUGGUACUUGcGCGUGGa-CCGGU------UGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.