miRNA display CGI


Results 1 - 20 of 834 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21399 5' -64.1 NC_004812.1 + 56250 0.65 0.615788
Target:  5'- -uCGUCCgcgggGGCGCGccccugcgccucGCCCGcGGCgGCCCg -3'
miRNA:   3'- cuGCAGG-----CCGCGCu-----------CGGGC-CUG-CGGG- -5'
21399 5' -64.1 NC_004812.1 + 14236 0.65 0.616744
Target:  5'- ----cCCGGUGCGAGgucccacCCCGGGaucgGCCCc -3'
miRNA:   3'- cugcaGGCCGCGCUC-------GGGCCUg---CGGG- -5'
21399 5' -64.1 NC_004812.1 + 62481 0.65 0.616744
Target:  5'- cGCGccucugggCCGGCGCGGaccacgcGCCCgccGGAuuCGCCCc -3'
miRNA:   3'- cUGCa-------GGCCGCGCU-------CGGG---CCU--GCGGG- -5'
21399 5' -64.1 NC_004812.1 + 7283 0.66 0.560736
Target:  5'- cGGCGgCCGcGUGUGAGgCCGccuguCGCCCg -3'
miRNA:   3'- -CUGCaGGC-CGCGCUCgGGCcu---GCGGG- -5'
21399 5' -64.1 NC_004812.1 + 41558 0.66 0.570153
Target:  5'- -cCG-CCGGCGCGGGCUgaGcGACgugcaGCCCg -3'
miRNA:   3'- cuGCaGGCCGCGCUCGGg-C-CUG-----CGGG- -5'
21399 5' -64.1 NC_004812.1 + 71086 0.66 0.559797
Target:  5'- gGGCGUUCGGCGaccggugccuccuCGguuucggucggaGGCgCGGGCGCCUc -3'
miRNA:   3'- -CUGCAGGCCGC-------------GC------------UCGgGCCUGCGGG- -5'
21399 5' -64.1 NC_004812.1 + 102383 0.66 0.560736
Target:  5'- gGACG-CCGGagGgGGGCacgaCGGaaGCGCCCg -3'
miRNA:   3'- -CUGCaGGCCg-CgCUCGg---GCC--UGCGGG- -5'
21399 5' -64.1 NC_004812.1 + 1504 0.66 0.570153
Target:  5'- -cCGUCgugaauuauucaCGGgGcCGucCCCGGGCGCCCg -3'
miRNA:   3'- cuGCAG------------GCCgC-GCucGGGCCUGCGGG- -5'
21399 5' -64.1 NC_004812.1 + 114651 0.66 0.564498
Target:  5'- -cCGUUCaGCGCGGGCaccaucaagagcgggCCGGugccgggcGCGCCCg -3'
miRNA:   3'- cuGCAGGcCGCGCUCG---------------GGCC--------UGCGGG- -5'
21399 5' -64.1 NC_004812.1 + 7782 0.66 0.560736
Target:  5'- -cCGUgCGGCGCGgccguguaGGCCgCGGGagaaGCCUa -3'
miRNA:   3'- cuGCAgGCCGCGC--------UCGG-GCCUg---CGGG- -5'
21399 5' -64.1 NC_004812.1 + 121496 0.66 0.570153
Target:  5'- gGAgGUagcGCGUGGGgCCGGGCGCCg -3'
miRNA:   3'- -CUgCAggcCGCGCUCgGGCCUGCGGg -5'
21399 5' -64.1 NC_004812.1 + 48477 0.66 0.570153
Target:  5'- uACG-CCGGcCGCGcGgCCGGGgGCUCg -3'
miRNA:   3'- cUGCaGGCC-GCGCuCgGGCCUgCGGG- -5'
21399 5' -64.1 NC_004812.1 + 122839 0.66 0.570153
Target:  5'- cGGCGgugCCGGCGCGcacGGCguccUCGGcgucGCGCCg -3'
miRNA:   3'- -CUGCa--GGCCGCGC---UCG----GGCC----UGCGGg -5'
21399 5' -64.1 NC_004812.1 + 11244 0.66 0.570153
Target:  5'- -cCGuUCCGGUGUucguccacGAGUucgucUCGGACGCCCc -3'
miRNA:   3'- cuGC-AGGCCGCG--------CUCG-----GGCCUGCGGG- -5'
21399 5' -64.1 NC_004812.1 + 100644 0.66 0.570153
Target:  5'- cACGg-CGGCGCGAGCC---GCGCCg -3'
miRNA:   3'- cUGCagGCCGCGCUCGGgccUGCGGg -5'
21399 5' -64.1 NC_004812.1 + 67390 0.66 0.570153
Target:  5'- gGGCcUCCGccgccGCGCgGAGCCgGGGC-CCCg -3'
miRNA:   3'- -CUGcAGGC-----CGCG-CUCGGgCCUGcGGG- -5'
21399 5' -64.1 NC_004812.1 + 37692 0.66 0.569209
Target:  5'- cGCGUCCcgcaucaGGUGguUGAGCUCGGccuGCGCCUg -3'
miRNA:   3'- cUGCAGG-------CCGC--GCUCGGGCC---UGCGGG- -5'
21399 5' -64.1 NC_004812.1 + 119291 0.66 0.570153
Target:  5'- gGGCGggcuguaCGGCGCGccguacCCCGGcguCGCCCu -3'
miRNA:   3'- -CUGCag-----GCCGCGCuc----GGGCCu--GCGGG- -5'
21399 5' -64.1 NC_004812.1 + 98925 0.66 0.570153
Target:  5'- aGCGcUCCuGGCGCucgaccgcGGCCCGGAggUGCUCg -3'
miRNA:   3'- cUGC-AGG-CCGCGc-------UCGGGCCU--GCGGG- -5'
21399 5' -64.1 NC_004812.1 + 10778 0.66 0.570153
Target:  5'- aGACaGUCCccgGGCGUGGGCCgCcGAC-CCCg -3'
miRNA:   3'- -CUG-CAGG---CCGCGCUCGG-GcCUGcGGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.