miRNA display CGI


Results 1 - 20 of 834 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21399 5' -64.1 NC_004812.1 + 98524 0.75 0.166468
Target:  5'- gGGCGgccCCGGCGaCGAGCCgucgcaGGGCGCCg -3'
miRNA:   3'- -CUGCa--GGCCGC-GCUCGGg-----CCUGCGGg -5'
21399 5' -64.1 NC_004812.1 + 44367 0.78 0.118849
Target:  5'- gGGCGUgcCCGGgGCGcAGCCCGcGGCGCCg -3'
miRNA:   3'- -CUGCA--GGCCgCGC-UCGGGC-CUGCGGg -5'
21399 5' -64.1 NC_004812.1 + 129001 0.77 0.127847
Target:  5'- cGGCGggccgCgGGCGCGGGCCCGGG-GCCg -3'
miRNA:   3'- -CUGCa----GgCCGCGCUCGGGCCUgCGGg -5'
21399 5' -64.1 NC_004812.1 + 90148 0.77 0.137472
Target:  5'- cGCGUCCuGGaCGCGgcGGCCCuGGACGCCa -3'
miRNA:   3'- cUGCAGG-CC-GCGC--UCGGG-CCUGCGGg -5'
21399 5' -64.1 NC_004812.1 + 154249 0.77 0.140826
Target:  5'- cGACG-CCGcGCGCGccgGGCCC-GACGCCCu -3'
miRNA:   3'- -CUGCaGGC-CGCGC---UCGGGcCUGCGGG- -5'
21399 5' -64.1 NC_004812.1 + 74314 0.76 0.147759
Target:  5'- gGGC-UCCGcGCGCGGGCCuCGaGCGCCCg -3'
miRNA:   3'- -CUGcAGGC-CGCGCUCGG-GCcUGCGGG- -5'
21399 5' -64.1 NC_004812.1 + 76521 0.76 0.15134
Target:  5'- cGACGgugUCGGCGaggacgcccUGGGCCCGGACGgCCg -3'
miRNA:   3'- -CUGCa--GGCCGC---------GCUCGGGCCUGCgGG- -5'
21399 5' -64.1 NC_004812.1 + 112970 0.76 0.162563
Target:  5'- cGACGUCCGGCgGCGAuggaucgcggcGCCgCGGcCGCCg -3'
miRNA:   3'- -CUGCAGGCCG-CGCU-----------CGG-GCCuGCGGg -5'
21399 5' -64.1 NC_004812.1 + 91127 0.75 0.166468
Target:  5'- cGugGUCCGcGCGCGcucGGCCCGGGgggGUCCa -3'
miRNA:   3'- -CugCAGGC-CGCGC---UCGGGCCUg--CGGG- -5'
21399 5' -64.1 NC_004812.1 + 445 0.78 0.113181
Target:  5'- cGCGcCCGcCGCGAGCCCGGGcCGCCg -3'
miRNA:   3'- cUGCaGGCcGCGCUCGGGCCU-GCGGg -5'
21399 5' -64.1 NC_004812.1 + 101954 0.78 0.113181
Target:  5'- gGGCGgCgGGCGUcagGGGCCgCGGACGCCCg -3'
miRNA:   3'- -CUGCaGgCCGCG---CUCGG-GCCUGCGGG- -5'
21399 5' -64.1 NC_004812.1 + 111571 0.78 0.106976
Target:  5'- cAUGUUCGGCGUgguGAGCCCGGcccacaagauggugGCGCCCg -3'
miRNA:   3'- cUGCAGGCCGCG---CUCGGGCC--------------UGCGGG- -5'
21399 5' -64.1 NC_004812.1 + 517 0.83 0.053571
Target:  5'- cGCGgCCGGgGCGGGCCCGcGCGCCCg -3'
miRNA:   3'- cUGCaGGCCgCGCUCGGGCcUGCGGG- -5'
21399 5' -64.1 NC_004812.1 + 10126 0.82 0.060778
Target:  5'- uGGCGUUCaGCGUGAGgCCCGGuACGCCCa -3'
miRNA:   3'- -CUGCAGGcCGCGCUC-GGGCC-UGCGGG- -5'
21399 5' -64.1 NC_004812.1 + 96257 0.8 0.078104
Target:  5'- uGACGUCCgaGGCGCGggcgGGCCUGG-CGCCCc -3'
miRNA:   3'- -CUGCAGG--CCGCGC----UCGGGCCuGCGGG- -5'
21399 5' -64.1 NC_004812.1 + 122443 0.8 0.084166
Target:  5'- cGGCGUCuccucgggCGGCGgGGGCgCGGGCGCCCc -3'
miRNA:   3'- -CUGCAG--------GCCGCgCUCGgGCCUGCGGG- -5'
21399 5' -64.1 NC_004812.1 + 27893 0.79 0.097419
Target:  5'- gGugGgcCCGGgGCGAGCCCGGucggggagaccggGCGCCCc -3'
miRNA:   3'- -CugCa-GGCCgCGCUCGGGCC-------------UGCGGG- -5'
21399 5' -64.1 NC_004812.1 + 126207 0.79 0.1001
Target:  5'- cGGCcUCCucGGCGCGgcAGCCCGGGCGCCg -3'
miRNA:   3'- -CUGcAGG--CCGCGC--UCGGGCCUGCGGg -5'
21399 5' -64.1 NC_004812.1 + 123816 0.78 0.105152
Target:  5'- uACGgggugCCGcGgGCgGGGCCCGGGCGCCCg -3'
miRNA:   3'- cUGCa----GGC-CgCG-CUCGGGCCUGCGGG- -5'
21399 5' -64.1 NC_004812.1 + 68178 0.78 0.105152
Target:  5'- cGGCGgccgCgGGCGgGGGCgcgCCGGACGCCCg -3'
miRNA:   3'- -CUGCa---GgCCGCgCUCG---GGCCUGCGGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.