miRNA display CGI

Results 1 - 20 of 834 are showing below:
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ID	Location	Perfect MFE.*	RefSeq Acc.	strand	Start Position	R_P_ratio#	P value
	Predicted miRNA align pattern
21399	5'	-64.1	NC_004812.1	+	123684	1.11	0.000498
	Target:  5'- cGACGUCCGGCGCGAGCCCGGACGCCCg -3' miRNA:   3'- -CUGCAGGCCGCGCUCGGGCCUGCGGG- -5'
21399	5'	-64.1	NC_004812.1	+	32890	0.83	0.050798
	Target:  5'- aGGCGUCCgagaugaugagguGGaucaGCGAGCCCGGGCGUCCg -3' miRNA:   3'- -CUGCAGG-------------CCg---CGCUCGGGCCUGCGGG- -5'
21399	5'	-64.1	NC_004812.1	+	31418	0.83	0.053571
	Target:  5'- cGCGgCCGGgGCGGGCCCGcGCGCCCg -3' miRNA:   3'- cUGCaGGCCgCGCUCGGGCcUGCGGG- -5'
21399	5'	-64.1	NC_004812.1	+	517	0.83	0.053571
	Target:  5'- cGCGgCCGGgGCGGGCCCGcGCGCCCg -3' miRNA:   3'- cUGCaGGCCgCGCUCGGGCcUGCGGG- -5'
21399	5'	-64.1	NC_004812.1	+	10126	0.82	0.060778
	Target:  5'- uGGCGUUCaGCGUGAGgCCCGGuACGCCCa -3' miRNA:   3'- -CUGCAGGcCGCGCUC-GGGCC-UGCGGG- -5'
21399	5'	-64.1	NC_004812.1	+	96257	0.8	0.078104
	Target:  5'- uGACGUCCgaGGCGCGggcgGGCCUGG-CGCCCc -3' miRNA:   3'- -CUGCAGG--CCGCGC----UCGGGCCuGCGGG- -5'
21399	5'	-64.1	NC_004812.1	+	122443	0.8	0.084166
	Target:  5'- cGGCGUCuccucgggCGGCGgGGGCgCGGGCGCCCc -3' miRNA:   3'- -CUGCAG--------GCCGCgCUCGgGCCUGCGGG- -5'
21399	5'	-64.1	NC_004812.1	+	153344	0.8	0.084166
	Target:  5'- cGGCGUCuccucgggCGGCGgGGGCgCGGGCGCCCc -3' miRNA:   3'- -CUGCAG--------GCCGCgCUCGgGCCUGCGGG- -5'
21399	5'	-64.1	NC_004812.1	+	88424	0.8	0.088454
	Target:  5'- gGGCGUCCGGCGCGcccccGCCCGcGGcCGCCg -3' miRNA:   3'- -CUGCAGGCCGCGCu----CGGGC-CU-GCGGg -5'
21399	5'	-64.1	NC_004812.1	+	74392	0.79	0.090675
	Target:  5'- cGGCGcUUCGGCGCGGGCCgGGccaGCCCg -3' miRNA:   3'- -CUGC-AGGCCGCGCUCGGgCCug-CGGG- -5'
21399	5'	-64.1	NC_004812.1	+	75725	0.79	0.090675
	Target:  5'- cACGagCCGGCGCGA-CCUGGGCGCCUg -3' miRNA:   3'- cUGCa-GGCCGCGCUcGGGCCUGCGGG- -5'
21399	5'	-64.1	NC_004812.1	+	105413	0.79	0.092949
	Target:  5'- cGGCGcUCGGCG-GGGCCCGG-CGCCCg -3' miRNA:   3'- -CUGCaGGCCGCgCUCGGGCCuGCGGG- -5'
21399	5'	-64.1	NC_004812.1	+	27893	0.79	0.097419
	Target:  5'- gGugGgcCCGGgGCGAGCCCGGucggggagaccggGCGCCCc -3' miRNA:   3'- -CugCa-GGCCgCGCUCGGGCC-------------UGCGGG- -5'
21399	5'	-64.1	NC_004812.1	+	103066	0.79	0.1001
	Target:  5'- uGCGUCgGGCGCGAgGCCCGaGAgGCCg -3' miRNA:   3'- cUGCAGgCCGCGCU-CGGGC-CUgCGGg -5'
21399	5'	-64.1	NC_004812.1	+	699	0.79	0.1001
	Target:  5'- cGGCcUCCucGGCGCGgcAGCCCGGGCGCCg -3' miRNA:   3'- -CUGcAGG--CCGCGC--UCGGGCCUGCGGg -5'
21399	5'	-64.1	NC_004812.1	+	126207	0.79	0.1001
	Target:  5'- cGGCcUCCucGGCGCGgcAGCCCGGGCGCCg -3' miRNA:   3'- -CUGcAGG--CCGCGC--UCGGGCCUGCGGg -5'
21399	5'	-64.1	NC_004812.1	+	154717	0.78	0.105152
	Target:  5'- uACGgggugCCGcGgGCgGGGCCCGGGCGCCCg -3' miRNA:   3'- cUGCa----GGC-CgCG-CUCGGGCCUGCGGG- -5'
21399	5'	-64.1	NC_004812.1	+	68178	0.78	0.105152
	Target:  5'- cGGCGgccgCgGGCGgGGGCgcgCCGGACGCCCg -3' miRNA:   3'- -CUGCa---GgCCGCgCUCG---GGCCUGCGGG- -5'
21399	5'	-64.1	NC_004812.1	+	123816	0.78	0.105152
	Target:  5'- uACGgggugCCGcGgGCgGGGCCCGGGCGCCCg -3' miRNA:   3'- cUGCa----GGC-CgCG-CUCGGGCCUGCGGG- -5'
21399	5'	-64.1	NC_004812.1	+	111571	0.78	0.106976
	Target:  5'- cAUGUUCGGCGUgguGAGCCCGGcccacaagauggugGCGCCCg -3' miRNA:   3'- cUGCAGGCCGCG---CUCGGGCC--------------UGCGGG- -5'

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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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