miRNA display CGI


Results 1 - 20 of 834 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21399 5' -64.1 NC_004812.1 + 45 0.66 0.598611
Target:  5'- cGGCGggccgCgGGCGCGgcGGCgCGG-CGCCa -3'
miRNA:   3'- -CUGCa----GgCCGCGC--UCGgGCCuGCGGg -5'
21399 5' -64.1 NC_004812.1 + 61 0.68 0.469694
Target:  5'- cGCGUuuGG-GCGGGCucCCGGGCGggcuCCCg -3'
miRNA:   3'- cUGCAggCCgCGCUCG--GGCCUGC----GGG- -5'
21399 5' -64.1 NC_004812.1 + 95 0.71 0.306818
Target:  5'- gGACGggCCGGgGCGcgcgcggGGCCgGGAgccCGCCCg -3'
miRNA:   3'- -CUGCa-GGCCgCGC-------UCGGgCCU---GCGGG- -5'
21399 5' -64.1 NC_004812.1 + 198 0.66 0.570153
Target:  5'- cGCGccgCCGGgGgaGGGCCCGGGuCGCgCa -3'
miRNA:   3'- cUGCa--GGCCgCg-CUCGGGCCU-GCGgG- -5'
21399 5' -64.1 NC_004812.1 + 378 0.69 0.402606
Target:  5'- -cCG-CCGGCGCau-CCCGcGGCGCCCc -3'
miRNA:   3'- cuGCaGGCCGCGcucGGGC-CUGCGGG- -5'
21399 5' -64.1 NC_004812.1 + 445 0.78 0.113181
Target:  5'- cGCGcCCGcCGCGAGCCCGGGcCGCCg -3'
miRNA:   3'- cUGCaGGCcGCGCUCGGGCCU-GCGGg -5'
21399 5' -64.1 NC_004812.1 + 517 0.83 0.053571
Target:  5'- cGCGgCCGGgGCGGGCCCGcGCGCCCg -3'
miRNA:   3'- cUGCaGGCCgCGCUCGGGCcUGCGGG- -5'
21399 5' -64.1 NC_004812.1 + 558 0.66 0.597658
Target:  5'- -cCGccCCGGCGCgcgcggccgcgugGAGCCgCGGGCGCg- -3'
miRNA:   3'- cuGCa-GGCCGCG-------------CUCGG-GCCUGCGgg -5'
21399 5' -64.1 NC_004812.1 + 577 0.73 0.246702
Target:  5'- -cCGUCCcgcGGCGCGgcccccGGcCCCGGGCGUCCc -3'
miRNA:   3'- cuGCAGG---CCGCGC------UC-GGGCCUGCGGG- -5'
21399 5' -64.1 NC_004812.1 + 699 0.79 0.1001
Target:  5'- cGGCcUCCucGGCGCGgcAGCCCGGGCGCCg -3'
miRNA:   3'- -CUGcAGG--CCGCGC--UCGGGCCUGCGGg -5'
21399 5' -64.1 NC_004812.1 + 716 0.7 0.37906
Target:  5'- cGGCGU-CGGCGCcGGCgCGGuCGCCg -3'
miRNA:   3'- -CUGCAgGCCGCGcUCGgGCCuGCGGg -5'
21399 5' -64.1 NC_004812.1 + 813 0.66 0.570153
Target:  5'- cACGgCCGGCcgggaaGCGGuGUCC-GACGCCCg -3'
miRNA:   3'- cUGCaGGCCG------CGCU-CGGGcCUGCGGG- -5'
21399 5' -64.1 NC_004812.1 + 859 0.67 0.551363
Target:  5'- -gUGUCCccgcGGcCGCGAGCCC---CGCCCg -3'
miRNA:   3'- cuGCAGG----CC-GCGCUCGGGccuGCGGG- -5'
21399 5' -64.1 NC_004812.1 + 980 0.68 0.467074
Target:  5'- gGGgGUCCGGgGUcgccgggguccuggGGGUCCGGGguCGCCCc -3'
miRNA:   3'- -CUgCAGGCCgCG--------------CUCGGGCCU--GCGGG- -5'
21399 5' -64.1 NC_004812.1 + 1011 0.71 0.334109
Target:  5'- -cCGgCCGGgGCcgcgcccccgcgaGGGCCCGGcCGCCCg -3'
miRNA:   3'- cuGCaGGCCgCG-------------CUCGGGCCuGCGGG- -5'
21399 5' -64.1 NC_004812.1 + 1152 0.74 0.200833
Target:  5'- -cCGg-CGGCGCGAGCCCGGcCcCCCg -3'
miRNA:   3'- cuGCagGCCGCGCUCGGGCCuGcGGG- -5'
21399 5' -64.1 NC_004812.1 + 1210 0.66 0.570153
Target:  5'- cACGcCCGGCcCG-GCCCGGcC-CCCg -3'
miRNA:   3'- cUGCaGGCCGcGCuCGGGCCuGcGGG- -5'
21399 5' -64.1 NC_004812.1 + 1243 0.68 0.478481
Target:  5'- -cCGcCCGG-GCGGcGCCgCGGcCGCCCg -3'
miRNA:   3'- cuGCaGGCCgCGCU-CGG-GCCuGCGGG- -5'
21399 5' -64.1 NC_004812.1 + 1353 0.67 0.551363
Target:  5'- uGGCGUCCGcCGCGcccccccucGGCCCGcccucGCGCaCCa -3'
miRNA:   3'- -CUGCAGGCcGCGC---------UCGGGCc----UGCG-GG- -5'
21399 5' -64.1 NC_004812.1 + 1374 0.67 0.50531
Target:  5'- aACG-CCGuGCGCGAcgGCCCGccccgcgccGCGCCCc -3'
miRNA:   3'- cUGCaGGC-CGCGCU--CGGGCc--------UGCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.