Results 1 - 20 of 424 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
21401 | 3' | -64.1 | NC_004812.1 | + | 1 | 0.66 | 0.597237 |
Target: 5'- -GAC-CCGGgcccuccCCCGGcGGCGCGCGc- -3' miRNA: 3'- gCUGcGGCCac-----GGGCU-CCGCGCGCac -5' |
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21401 | 3' | -64.1 | NC_004812.1 | + | 199 | 0.7 | 0.369539 |
Target: 5'- gCGcCGCCGGgggaggGCCCGGGuCGCGCa-- -3' miRNA: 3'- -GCuGCGGCCa-----CGGGCUCcGCGCGcac -5' |
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21401 | 3' | -64.1 | NC_004812.1 | + | 814 | 0.67 | 0.513671 |
Target: 5'- aCGGCcgGCCGGgaagcgguguccgacGCCCGgaGGGCcccGCGCGUGu -3' miRNA: 3'- -GCUG--CGGCCa--------------CGGGC--UCCG---CGCGCAC- -5' |
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21401 | 3' | -64.1 | NC_004812.1 | + | 1221 | 0.66 | 0.574368 |
Target: 5'- gCGGCGCCGcGggggcuccuccccGCCCGGgcGGCGcCGCGg- -3' miRNA: 3'- -GCUGCGGC-Ca------------CGGGCU--CCGC-GCGCac -5' |
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21401 | 3' | -64.1 | NC_004812.1 | + | 1469 | 0.73 | 0.218501 |
Target: 5'- gCGACGCCGGcGUCCucGGCGgGCGg- -3' miRNA: 3'- -GCUGCGGCCaCGGGcuCCGCgCGCac -5' |
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21401 | 3' | -64.1 | NC_004812.1 | + | 1675 | 0.66 | 0.549829 |
Target: 5'- gCGGCGCCGcGgcccGCCCGcGGCGgGgGa- -3' miRNA: 3'- -GCUGCGGC-Ca---CGGGCuCCGCgCgCac -5' |
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21401 | 3' | -64.1 | NC_004812.1 | + | 2026 | 0.73 | 0.218501 |
Target: 5'- cCGACGCCGGcggGCCucggucggcggCGGGGgGCGCGg- -3' miRNA: 3'- -GCUGCGGCCa--CGG-----------GCUCCgCGCGCac -5' |
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21401 | 3' | -64.1 | NC_004812.1 | + | 2296 | 0.73 | 0.239423 |
Target: 5'- gCGGCGUCGGgguccgGCUCGAgcagGGCGCGCGc- -3' miRNA: 3'- -GCUGCGGCCa-----CGGGCU----CCGCGCGCac -5' |
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21401 | 3' | -64.1 | NC_004812.1 | + | 2357 | 0.76 | 0.139408 |
Target: 5'- gGGCGUCGG-GCCCGGcGCGCGCGg- -3' miRNA: 3'- gCUGCGGCCaCGGGCUcCGCGCGCac -5' |
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21401 | 3' | -64.1 | NC_004812.1 | + | 2480 | 0.68 | 0.442045 |
Target: 5'- gGGCGCCGGcggcggcgGCCuCGcGGGCGgGCGa- -3' miRNA: 3'- gCUGCGGCCa-------CGG-GC-UCCGCgCGCac -5' |
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21401 | 3' | -64.1 | NC_004812.1 | + | 2580 | 0.77 | 0.12962 |
Target: 5'- gGGCGUguCGG-GCCCGAGGCGCGUGc- -3' miRNA: 3'- gCUGCG--GCCaCGGGCUCCGCGCGCac -5' |
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21401 | 3' | -64.1 | NC_004812.1 | + | 2624 | 0.7 | 0.347246 |
Target: 5'- uGGCGCCGcG-GCCC-AGGCGCgGCGg- -3' miRNA: 3'- gCUGCGGC-CaCGGGcUCCGCG-CGCac -5' |
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21401 | 3' | -64.1 | NC_004812.1 | + | 2696 | 0.71 | 0.29581 |
Target: 5'- aGACGCCGGgcccgaagacgcgGCCgGAGGCcagcacgGCGCGg- -3' miRNA: 3'- gCUGCGGCCa------------CGGgCUCCG-------CGCGCac -5' |
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21401 | 3' | -64.1 | NC_004812.1 | + | 3206 | 0.84 | 0.040917 |
Target: 5'- gCGGCGCagCGG-GCCCGAGGCGCGCGg- -3' miRNA: 3'- -GCUGCG--GCCaCGGGCUCCGCGCGCac -5' |
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21401 | 3' | -64.1 | NC_004812.1 | + | 3249 | 0.66 | 0.597237 |
Target: 5'- cCGGaGCCGG-GCUCGGGcgggccgcaGCGCGCGg- -3' miRNA: 3'- -GCUgCGGCCaCGGGCUC---------CGCGCGCac -5' |
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21401 | 3' | -64.1 | NC_004812.1 | + | 3514 | 0.67 | 0.512756 |
Target: 5'- cCGGgGCCGGcgGCCCcgGGGGCGgggcCGCGg- -3' miRNA: 3'- -GCUgCGGCCa-CGGG--CUCCGC----GCGCac -5' |
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21401 | 3' | -64.1 | NC_004812.1 | + | 3768 | 0.68 | 0.459224 |
Target: 5'- gCGGCGCCGGcgacgaGgCUGAcGGCGCGCa-- -3' miRNA: 3'- -GCUGCGGCCa-----CgGGCU-CCGCGCGcac -5' |
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21401 | 3' | -64.1 | NC_004812.1 | + | 4220 | 0.68 | 0.485639 |
Target: 5'- gCGGCGUCGG-GCUCgGGGGCG-GCGg- -3' miRNA: 3'- -GCUGCGGCCaCGGG-CUCCGCgCGCac -5' |
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21401 | 3' | -64.1 | NC_004812.1 | + | 4250 | 0.66 | 0.56868 |
Target: 5'- gCGGCGgCGGcGCCCGccgcGGCG-GCGUu -3' miRNA: 3'- -GCUGCgGCCaCGGGCu---CCGCgCGCAc -5' |
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21401 | 3' | -64.1 | NC_004812.1 | + | 4337 | 0.77 | 0.136072 |
Target: 5'- uCGGgGCCuacguGGUGCUCGugGGGCGCGCGUGc -3' miRNA: 3'- -GCUgCGG-----CCACGGGC--UCCGCGCGCAC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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