miRNA display CGI


Results 1 - 20 of 424 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21401 3' -64.1 NC_004812.1 + 85376 0.65 0.605852
Target:  5'- gGACGCCgagcugugcuucgGGcGCCCGGGG-GcCGCGUu -3'
miRNA:   3'- gCUGCGG-------------CCaCGGGCUCCgC-GCGCAc -5'
21401 3' -64.1 NC_004812.1 + 105909 0.65 0.605852
Target:  5'- uCGugGCCugGGUccgucgcGCCCGAGGaGCGCc-- -3'
miRNA:   3'- -GCugCGG--CCA-------CGGGCUCCgCGCGcac -5'
21401 3' -64.1 NC_004812.1 + 95864 0.66 0.56868
Target:  5'- aGGCGCgGGUGCggugggCCGAGGgG-GCGg- -3'
miRNA:   3'- gCUGCGgCCACG------GGCUCCgCgCGCac -5'
21401 3' -64.1 NC_004812.1 + 53000 0.66 0.56868
Target:  5'- aGGgGgCGGcUGuagcacguCCCGGGGCGCGCGg- -3'
miRNA:   3'- gCUgCgGCC-AC--------GGGCUCCGCGCGCac -5'
21401 3' -64.1 NC_004812.1 + 147991 0.66 0.549829
Target:  5'- uGGCGCCGGgcggcggGgCCGAGG-GCGaCGg- -3'
miRNA:   3'- gCUGCGGCCa------CgGGCUCCgCGC-GCac -5'
21401 3' -64.1 NC_004812.1 + 85099 0.66 0.559232
Target:  5'- cCGAgGCCGuccgcacccacGUGaccgccaacuaCCGGGGCGCGCGg- -3'
miRNA:   3'- -GCUgCGGC-----------CACg----------GGCUCCGCGCGCac -5'
21401 3' -64.1 NC_004812.1 + 15402 0.66 0.56868
Target:  5'- cCGugGCCGGgGCCguCGA-GCGCGCc-- -3'
miRNA:   3'- -GCugCGGCCaCGG--GCUcCGCGCGcac -5'
21401 3' -64.1 NC_004812.1 + 110548 0.66 0.558289
Target:  5'- --cCGCCGGccUGCCCGGacgugccGGCGUuCGUGg -3'
miRNA:   3'- gcuGCGGCC--ACGGGCU-------CCGCGcGCAC- -5'
21401 3' -64.1 NC_004812.1 + 142814 0.66 0.578167
Target:  5'- uGACGgC-GUGCCCGcGGCGCaacgcCGUGg -3'
miRNA:   3'- gCUGCgGcCACGGGCuCCGCGc----GCAC- -5'
21401 3' -64.1 NC_004812.1 + 125009 0.66 0.576267
Target:  5'- cCGACGCCGacggagcuccgGaCCCGGGGaCGCGCu-- -3'
miRNA:   3'- -GCUGCGGCca---------C-GGGCUCC-GCGCGcac -5'
21401 3' -64.1 NC_004812.1 + 46286 0.66 0.56868
Target:  5'- -cGCGCgGGgcgGCCgGAGGC-CGCGg- -3'
miRNA:   3'- gcUGCGgCCa--CGGgCUCCGcGCGCac -5'
21401 3' -64.1 NC_004812.1 + 1221 0.66 0.574368
Target:  5'- gCGGCGCCGcGggggcuccuccccGCCCGGgcGGCGcCGCGg- -3'
miRNA:   3'- -GCUGCGGC-Ca------------CGGGCU--CCGC-GCGCac -5'
21401 3' -64.1 NC_004812.1 + 88372 0.66 0.549829
Target:  5'- gCGACGCC-GUGC---GGGCGUGCGUc -3'
miRNA:   3'- -GCUGCGGcCACGggcUCCGCGCGCAc -5'
21401 3' -64.1 NC_004812.1 + 129758 0.66 0.56868
Target:  5'- gCGGCGgCGGcGCCCGccgcGGCG-GCGUu -3'
miRNA:   3'- -GCUGCgGCCaCGGGCu---CCGCgCGCAc -5'
21401 3' -64.1 NC_004812.1 + 130343 0.66 0.549829
Target:  5'- uCGGCGuCCaGGggcacgGCCCGcGGCGgCGCGg- -3'
miRNA:   3'- -GCUGC-GG-CCa-----CGGGCuCCGC-GCGCac -5'
21401 3' -64.1 NC_004812.1 + 8733 0.66 0.559232
Target:  5'- cCGGCuGCCGGgaaaucuCCCG-GGCGCGCc-- -3'
miRNA:   3'- -GCUG-CGGCCac-----GGGCuCCGCGCGcac -5'
21401 3' -64.1 NC_004812.1 + 100833 0.66 0.56868
Target:  5'- aCGAcCGCgGGgcUGCCCaGGGGCaggGCGCGa- -3'
miRNA:   3'- -GCU-GCGgCC--ACGGG-CUCCG---CGCGCac -5'
21401 3' -64.1 NC_004812.1 + 51592 0.66 0.549829
Target:  5'- gGAgGCCGGaGagaCCGAGGCugucgGCGCGcUGg -3'
miRNA:   3'- gCUgCGGCCaCg--GGCUCCG-----CGCGC-AC- -5'
21401 3' -64.1 NC_004812.1 + 48158 0.66 0.578167
Target:  5'- gCGGCGCCGGgcgGCggCCGcGGCGCuggagaacGCGg- -3'
miRNA:   3'- -GCUGCGGCCa--CG--GGCuCCGCG--------CGCac -5'
21401 3' -64.1 NC_004812.1 + 1675 0.66 0.549829
Target:  5'- gCGGCGCCGcGgcccGCCCGcGGCGgGgGa- -3'
miRNA:   3'- -GCUGCGGC-Ca---CGGGCuCCGCgCgCac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.