miRNA display CGI


Results 1 - 20 of 424 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21401 3' -64.1 NC_004812.1 + 114681 0.73 0.22358
Target:  5'- cCGGUGCCGGgcgcGCCCGGGGC-CGCGg- -3'
miRNA:   3'- -GCUGCGGCCa---CGGGCUCCGcGCGCac -5'
21401 3' -64.1 NC_004812.1 + 73769 0.75 0.187404
Target:  5'- gGGCGCCgGGUGCCCGcgggcuccgcgagcgGGGCGgGCGc- -3'
miRNA:   3'- gCUGCGG-CCACGGGC---------------UCCGCgCGCac -5'
21401 3' -64.1 NC_004812.1 + 8375 0.74 0.190062
Target:  5'- gCGGcCGCCGGgGCCCGGGGUccggggGCGCGg- -3'
miRNA:   3'- -GCU-GCGGCCaCGGGCUCCG------CGCGCac -5'
21401 3' -64.1 NC_004812.1 + 74885 0.74 0.194565
Target:  5'- cCGGCGCCGcGUcucgccgagcgcGUCC-AGGCGCGCGUGc -3'
miRNA:   3'- -GCUGCGGC-CA------------CGGGcUCCGCGCGCAC- -5'
21401 3' -64.1 NC_004812.1 + 152980 0.74 0.203852
Target:  5'- gCGGCGCCGcGcGCCCGccGGCGCGCa-- -3'
miRNA:   3'- -GCUGCGGC-CaCGGGCu-CCGCGCGcac -5'
21401 3' -64.1 NC_004812.1 + 71092 0.74 0.205755
Target:  5'- uCGGCGaCCGGUGCCUccucgguuucggucgGAGGCGCGgGc- -3'
miRNA:   3'- -GCUGC-GGCCACGGG---------------CUCCGCGCgCac -5'
21401 3' -64.1 NC_004812.1 + 106805 0.74 0.208638
Target:  5'- -cGCGCUGGcUGCCCGgcAGGCaGUGCGUGu -3'
miRNA:   3'- gcUGCGGCC-ACGGGC--UCCG-CGCGCAC- -5'
21401 3' -64.1 NC_004812.1 + 126977 0.73 0.218501
Target:  5'- gCGACGCCGGcGUCCucGGCGgGCGg- -3'
miRNA:   3'- -GCUGCGGCCaCGGGcuCCGCgCGCac -5'
21401 3' -64.1 NC_004812.1 + 127535 0.73 0.218501
Target:  5'- cCGACGCCGGcggGCCucggucggcggCGGGGgGCGCGg- -3'
miRNA:   3'- -GCUGCGGCCa--CGG-----------GCUCCgCGCGCac -5'
21401 3' -64.1 NC_004812.1 + 125257 0.75 0.177099
Target:  5'- -cGCGCCGGcgGCCCGggcucgcggcGGGCGCGCGc- -3'
miRNA:   3'- gcUGCGGCCa-CGGGC----------UCCGCGCGCac -5'
21401 3' -64.1 NC_004812.1 + 12119 0.75 0.172955
Target:  5'- cCGGCGUCGGggggGUUgGGGGCGCGCGg- -3'
miRNA:   3'- -GCUGCGGCCa---CGGgCUCCGCGCGCac -5'
21401 3' -64.1 NC_004812.1 + 145728 0.75 0.172545
Target:  5'- gGACGCCcgaacgcGGcGaCCCGGGGCGCGCGg- -3'
miRNA:   3'- gCUGCGG-------CCaC-GGGCUCCGCGCGCac -5'
21401 3' -64.1 NC_004812.1 + 128715 0.84 0.040917
Target:  5'- gCGGCGCagCGG-GCCCGAGGCGCGCGg- -3'
miRNA:   3'- -GCUGCG--GCCaCGGGCUCCGCGCGCac -5'
21401 3' -64.1 NC_004812.1 + 130542 0.77 0.12047
Target:  5'- aCGACcCCGG-GCCgGGGGCGCGCGa- -3'
miRNA:   3'- -GCUGcGGCCaCGGgCUCCGCGCGCac -5'
21401 3' -64.1 NC_004812.1 + 128088 0.77 0.12962
Target:  5'- gGGCGUguCGG-GCCCGAGGCGCGUGc- -3'
miRNA:   3'- gCUGCG--GCCaCGGGCUCCGCGCGCac -5'
21401 3' -64.1 NC_004812.1 + 4337 0.77 0.136072
Target:  5'- uCGGgGCCuacguGGUGCUCGugGGGCGCGCGUGc -3'
miRNA:   3'- -GCUgCGG-----CCACGGGC--UCCGCGCGCAC- -5'
21401 3' -64.1 NC_004812.1 + 127865 0.76 0.139408
Target:  5'- gGGCGUCGG-GCCCGGcGCGCGCGg- -3'
miRNA:   3'- gCUGCGGCCaCGGGCUcCGCGCGCac -5'
21401 3' -64.1 NC_004812.1 + 155855 0.75 0.16104
Target:  5'- gCGGCGCCGGgaggCGAGGCGCGCGc- -3'
miRNA:   3'- -GCUGCGGCCacggGCUCCGCGCGCac -5'
21401 3' -64.1 NC_004812.1 + 121720 0.75 0.168898
Target:  5'- gCGGCGagagcaGGUGCCCGGgccGGCGCGCGg- -3'
miRNA:   3'- -GCUGCgg----CCACGGGCU---CCGCGCGCac -5'
21401 3' -64.1 NC_004812.1 + 50491 0.75 0.168898
Target:  5'- gGACGCCGG-GCgCCGAGGCGCucacccGCGc- -3'
miRNA:   3'- gCUGCGGCCaCG-GGCUCCGCG------CGCac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.