miRNA display CGI


Results 1 - 20 of 424 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21401 3' -64.1 NC_004812.1 + 122927 1.07 0.000924
Target:  5'- gCGACGCCGGUGCCCGAGGCGCGCGUGu -3'
miRNA:   3'- -GCUGCGGCCACGGGCUCCGCGCGCAC- -5'
21401 3' -64.1 NC_004812.1 + 144500 0.87 0.026449
Target:  5'- gGACGCUGGUccuGCgCGAGGCGCGCGUGg -3'
miRNA:   3'- gCUGCGGCCA---CGgGCUCCGCGCGCAC- -5'
21401 3' -64.1 NC_004812.1 + 128715 0.84 0.040917
Target:  5'- gCGGCGCagCGG-GCCCGAGGCGCGCGg- -3'
miRNA:   3'- -GCUGCG--GCCaCGGGCUCCGCGCGCac -5'
21401 3' -64.1 NC_004812.1 + 3206 0.84 0.040917
Target:  5'- gCGGCGCagCGG-GCCCGAGGCGCGCGg- -3'
miRNA:   3'- -GCUGCG--GCCaCGGGCUCCGCGCGCac -5'
21401 3' -64.1 NC_004812.1 + 12896 0.8 0.083117
Target:  5'- gCGGCGCuCGGUGCCCccGGGGCGgCGCGg- -3'
miRNA:   3'- -GCUGCG-GCCACGGG--CUCCGC-GCGCac -5'
21401 3' -64.1 NC_004812.1 + 130542 0.77 0.12047
Target:  5'- aCGACcCCGG-GCCgGGGGCGCGCGa- -3'
miRNA:   3'- -GCUGcGGCCaCGGgCUCCGCGCGCac -5'
21401 3' -64.1 NC_004812.1 + 5033 0.77 0.12047
Target:  5'- aCGACcCCGG-GCCgGGGGCGCGCGa- -3'
miRNA:   3'- -GCUGcGGCCaCGGgCUCCGCGCGCac -5'
21401 3' -64.1 NC_004812.1 + 2580 0.77 0.12962
Target:  5'- gGGCGUguCGG-GCCCGAGGCGCGUGc- -3'
miRNA:   3'- gCUGCG--GCCaCGGGCUCCGCGCGCac -5'
21401 3' -64.1 NC_004812.1 + 128088 0.77 0.12962
Target:  5'- gGGCGUguCGG-GCCCGAGGCGCGUGc- -3'
miRNA:   3'- gCUGCG--GCCaCGGGCUCCGCGCGCac -5'
21401 3' -64.1 NC_004812.1 + 4337 0.77 0.136072
Target:  5'- uCGGgGCCuacguGGUGCUCGugGGGCGCGCGUGc -3'
miRNA:   3'- -GCUgCGG-----CCACGGGC--UCCGCGCGCAC- -5'
21401 3' -64.1 NC_004812.1 + 35238 0.77 0.136072
Target:  5'- uCGGgGCCuacguGGUGCUCGugGGGCGCGCGUGc -3'
miRNA:   3'- -GCUgCGG-----CCACGGGC--UCCGCGCGCAC- -5'
21401 3' -64.1 NC_004812.1 + 121965 0.77 0.136072
Target:  5'- uGGCGCCGGUgGCCCG-GGUGUGCa-- -3'
miRNA:   3'- gCUGCGGCCA-CGGGCuCCGCGCGcac -5'
21401 3' -64.1 NC_004812.1 + 127865 0.76 0.139408
Target:  5'- gGGCGUCGG-GCCCGGcGCGCGCGg- -3'
miRNA:   3'- gCUGCGGCCaCGGGCUcCGCGCGCac -5'
21401 3' -64.1 NC_004812.1 + 2357 0.76 0.139408
Target:  5'- gGGCGUCGG-GCCCGGcGCGCGCGg- -3'
miRNA:   3'- gCUGCGGCCaCGGGCUcCGCGCGCac -5'
21401 3' -64.1 NC_004812.1 + 15599 0.76 0.149869
Target:  5'- uCGuCGUCGGUGUCCGGGGCcccUGCGUGg -3'
miRNA:   3'- -GCuGCGGCCACGGGCUCCGc--GCGCAC- -5'
21401 3' -64.1 NC_004812.1 + 22261 0.76 0.153512
Target:  5'- uCGuu-CCGG-GCCCGGGGCGCGCGUc -3'
miRNA:   3'- -GCugcGGCCaCGGGCUCCGCGCGCAc -5'
21401 3' -64.1 NC_004812.1 + 155855 0.75 0.16104
Target:  5'- gCGGCGCCGGgaggCGAGGCGCGCGc- -3'
miRNA:   3'- -GCUGCGGCCacggGCUCCGCGCGCac -5'
21401 3' -64.1 NC_004812.1 + 30347 0.75 0.16104
Target:  5'- gCGGCGCCGGgaggCGAGGCGCGCGc- -3'
miRNA:   3'- -GCUGCGGCCacggGCUCCGCGCGCac -5'
21401 3' -64.1 NC_004812.1 + 50491 0.75 0.168898
Target:  5'- gGACGCCGG-GCgCCGAGGCGCucacccGCGc- -3'
miRNA:   3'- gCUGCGGCCaCG-GGCUCCGCG------CGCac -5'
21401 3' -64.1 NC_004812.1 + 121720 0.75 0.168898
Target:  5'- gCGGCGagagcaGGUGCCCGGgccGGCGCGCGg- -3'
miRNA:   3'- -GCUGCgg----CCACGGGCU---CCGCGCGCac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.