miRNA display CGI


Results 1 - 20 of 424 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21401 3' -64.1 NC_004812.1 + 1 0.66 0.597237
Target:  5'- -GAC-CCGGgcccuccCCCGGcGGCGCGCGc- -3'
miRNA:   3'- gCUGcGGCCac-----GGGCU-CCGCGCGCac -5'
21401 3' -64.1 NC_004812.1 + 199 0.7 0.369539
Target:  5'- gCGcCGCCGGgggaggGCCCGGGuCGCGCa-- -3'
miRNA:   3'- -GCuGCGGCCa-----CGGGCUCcGCGCGcac -5'
21401 3' -64.1 NC_004812.1 + 814 0.67 0.513671
Target:  5'- aCGGCcgGCCGGgaagcgguguccgacGCCCGgaGGGCcccGCGCGUGu -3'
miRNA:   3'- -GCUG--CGGCCa--------------CGGGC--UCCG---CGCGCAC- -5'
21401 3' -64.1 NC_004812.1 + 1221 0.66 0.574368
Target:  5'- gCGGCGCCGcGggggcuccuccccGCCCGGgcGGCGcCGCGg- -3'
miRNA:   3'- -GCUGCGGC-Ca------------CGGGCU--CCGC-GCGCac -5'
21401 3' -64.1 NC_004812.1 + 1469 0.73 0.218501
Target:  5'- gCGACGCCGGcGUCCucGGCGgGCGg- -3'
miRNA:   3'- -GCUGCGGCCaCGGGcuCCGCgCGCac -5'
21401 3' -64.1 NC_004812.1 + 1675 0.66 0.549829
Target:  5'- gCGGCGCCGcGgcccGCCCGcGGCGgGgGa- -3'
miRNA:   3'- -GCUGCGGC-Ca---CGGGCuCCGCgCgCac -5'
21401 3' -64.1 NC_004812.1 + 2026 0.73 0.218501
Target:  5'- cCGACGCCGGcggGCCucggucggcggCGGGGgGCGCGg- -3'
miRNA:   3'- -GCUGCGGCCa--CGG-----------GCUCCgCGCGCac -5'
21401 3' -64.1 NC_004812.1 + 2296 0.73 0.239423
Target:  5'- gCGGCGUCGGgguccgGCUCGAgcagGGCGCGCGc- -3'
miRNA:   3'- -GCUGCGGCCa-----CGGGCU----CCGCGCGCac -5'
21401 3' -64.1 NC_004812.1 + 2357 0.76 0.139408
Target:  5'- gGGCGUCGG-GCCCGGcGCGCGCGg- -3'
miRNA:   3'- gCUGCGGCCaCGGGCUcCGCGCGCac -5'
21401 3' -64.1 NC_004812.1 + 2480 0.68 0.442045
Target:  5'- gGGCGCCGGcggcggcgGCCuCGcGGGCGgGCGa- -3'
miRNA:   3'- gCUGCGGCCa-------CGG-GC-UCCGCgCGCac -5'
21401 3' -64.1 NC_004812.1 + 2580 0.77 0.12962
Target:  5'- gGGCGUguCGG-GCCCGAGGCGCGUGc- -3'
miRNA:   3'- gCUGCG--GCCaCGGGCUCCGCGCGCac -5'
21401 3' -64.1 NC_004812.1 + 2624 0.7 0.347246
Target:  5'- uGGCGCCGcG-GCCC-AGGCGCgGCGg- -3'
miRNA:   3'- gCUGCGGC-CaCGGGcUCCGCG-CGCac -5'
21401 3' -64.1 NC_004812.1 + 2696 0.71 0.29581
Target:  5'- aGACGCCGGgcccgaagacgcgGCCgGAGGCcagcacgGCGCGg- -3'
miRNA:   3'- gCUGCGGCCa------------CGGgCUCCG-------CGCGCac -5'
21401 3' -64.1 NC_004812.1 + 3206 0.84 0.040917
Target:  5'- gCGGCGCagCGG-GCCCGAGGCGCGCGg- -3'
miRNA:   3'- -GCUGCG--GCCaCGGGCUCCGCGCGCac -5'
21401 3' -64.1 NC_004812.1 + 3249 0.66 0.597237
Target:  5'- cCGGaGCCGG-GCUCGGGcgggccgcaGCGCGCGg- -3'
miRNA:   3'- -GCUgCGGCCaCGGGCUC---------CGCGCGCac -5'
21401 3' -64.1 NC_004812.1 + 3514 0.67 0.512756
Target:  5'- cCGGgGCCGGcgGCCCcgGGGGCGgggcCGCGg- -3'
miRNA:   3'- -GCUgCGGCCa-CGGG--CUCCGC----GCGCac -5'
21401 3' -64.1 NC_004812.1 + 3768 0.68 0.459224
Target:  5'- gCGGCGCCGGcgacgaGgCUGAcGGCGCGCa-- -3'
miRNA:   3'- -GCUGCGGCCa-----CgGGCU-CCGCGCGcac -5'
21401 3' -64.1 NC_004812.1 + 4220 0.68 0.485639
Target:  5'- gCGGCGUCGG-GCUCgGGGGCG-GCGg- -3'
miRNA:   3'- -GCUGCGGCCaCGGG-CUCCGCgCGCac -5'
21401 3' -64.1 NC_004812.1 + 4250 0.66 0.56868
Target:  5'- gCGGCGgCGGcGCCCGccgcGGCG-GCGUu -3'
miRNA:   3'- -GCUGCgGCCaCGGGCu---CCGCgCGCAc -5'
21401 3' -64.1 NC_004812.1 + 4337 0.77 0.136072
Target:  5'- uCGGgGCCuacguGGUGCUCGugGGGCGCGCGUGc -3'
miRNA:   3'- -GCUgCGG-----CCACGGGC--UCCGCGCGCAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.