miRNA display CGI


Results 1 - 20 of 359 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21401 5' -56.3 NC_004812.1 + 60847 0.66 0.899309
Target:  5'- cUCGCagagGCGCGUcaGGUUCGGGGcGCg -3'
miRNA:   3'- aGGUGca--UGUGCAucUCGAGCCCC-CG- -5'
21401 5' -56.3 NC_004812.1 + 22096 0.66 0.904934
Target:  5'- -gCGCGUugGCgGUGGcguccauGGCgaugaucCGGGGGCa -3'
miRNA:   3'- agGUGCAugUG-CAUC-------UCGa------GCCCCCG- -5'
21401 5' -56.3 NC_004812.1 + 146701 0.66 0.892844
Target:  5'- aCUugGaACACaUAGA-CUCGGGGGg -3'
miRNA:   3'- aGGugCaUGUGcAUCUcGAGCCCCCg -5'
21401 5' -56.3 NC_004812.1 + 94552 0.66 0.905547
Target:  5'- gUCgGCGgccCugGUggcGGGGCUCGGGGc- -3'
miRNA:   3'- -AGgUGCau-GugCA---UCUCGAGCCCCcg -5'
21401 5' -56.3 NC_004812.1 + 130192 0.66 0.899309
Target:  5'- gUCCACcuccgGCGCGccccAGAGCccCGGGcGGCu -3'
miRNA:   3'- -AGGUGca---UGUGCa---UCUCGa-GCCC-CCG- -5'
21401 5' -56.3 NC_004812.1 + 122337 0.66 0.899309
Target:  5'- aUCACGaUGgGCGcGGGGUucccggCGGGGGCc -3'
miRNA:   3'- aGGUGC-AUgUGCaUCUCGa-----GCCCCCG- -5'
21401 5' -56.3 NC_004812.1 + 148229 0.66 0.905547
Target:  5'- gCUugGgugGCcgGCGgggGGAGCa-GGGGGCg -3'
miRNA:   3'- aGGugCa--UG--UGCa--UCUCGagCCCCCG- -5'
21401 5' -56.3 NC_004812.1 + 5701 0.66 0.899309
Target:  5'- cCCAgGgcCACG-GGGGggCGGGGGUc -3'
miRNA:   3'- aGGUgCauGUGCaUCUCgaGCCCCCG- -5'
21401 5' -56.3 NC_004812.1 + 10359 0.66 0.899309
Target:  5'- gCCGCGUcgcgccccggGCugGUuuuuauGCUCuGGGGCg -3'
miRNA:   3'- aGGUGCA----------UGugCAucu---CGAGcCCCCG- -5'
21401 5' -56.3 NC_004812.1 + 147203 0.66 0.911557
Target:  5'- -gCAUGUGCugGUGGGucuGUagGcGGGGCg -3'
miRNA:   3'- agGUGCAUGugCAUCU---CGagC-CCCCG- -5'
21401 5' -56.3 NC_004812.1 + 151904 0.66 0.892844
Target:  5'- gCCugGgcgACAgcCGcccGGGGCUCuGGGGCg -3'
miRNA:   3'- aGGugCa--UGU--GCa--UCUCGAGcCCCCG- -5'
21401 5' -56.3 NC_004812.1 + 38619 0.66 0.899309
Target:  5'- cCCGCGUGguuCGCGaAGcGCUCcagcgGGGGGUu -3'
miRNA:   3'- aGGUGCAU---GUGCaUCuCGAG-----CCCCCG- -5'
21401 5' -56.3 NC_004812.1 + 32811 0.66 0.905547
Target:  5'- -aCGCGgaagccggGCGCGgacgagugGGGGCg-GGGGGCg -3'
miRNA:   3'- agGUGCa-------UGUGCa-------UCUCGagCCCCCG- -5'
21401 5' -56.3 NC_004812.1 + 105291 0.66 0.910966
Target:  5'- cUCUACuucgucgGUGC-CGUGGGGCUUGGguuuGGGUa -3'
miRNA:   3'- -AGGUG-------CAUGuGCAUCUCGAGCC----CCCG- -5'
21401 5' -56.3 NC_004812.1 + 80812 0.66 0.905547
Target:  5'- cCCugGggggACAgGUcgaccGAG-UCGGGGGCa -3'
miRNA:   3'- aGGugCa---UGUgCAu----CUCgAGCCCCCG- -5'
21401 5' -56.3 NC_004812.1 + 90649 0.66 0.922882
Target:  5'- cCCACGUguggcagaGCACGUucGuGCUCGuGGugcGGCg -3'
miRNA:   3'- aGGUGCA--------UGUGCAu-CuCGAGC-CC---CCG- -5'
21401 5' -56.3 NC_004812.1 + 35794 0.66 0.911557
Target:  5'- aCUGCGUGaaguGCGUcucGGGGC-CGuGGGGCu -3'
miRNA:   3'- aGGUGCAUg---UGCA---UCUCGaGC-CCCCG- -5'
21401 5' -56.3 NC_004812.1 + 45143 0.66 0.911557
Target:  5'- gUCCACGggggGCcucacGAGCgagCGGGGGUu -3'
miRNA:   3'- -AGGUGCa---UGugcauCUCGa--GCCCCCG- -5'
21401 5' -56.3 NC_004812.1 + 16740 0.66 0.905547
Target:  5'- gCC-CGUcgACGcAGGGCgcccCGGGGGCc -3'
miRNA:   3'- aGGuGCAugUGCaUCUCGa---GCCCCCG- -5'
21401 5' -56.3 NC_004812.1 + 106223 0.66 0.899309
Target:  5'- uUCUGCGcgguggUGCACGcgcccccGGCgUCGGGGGCg -3'
miRNA:   3'- -AGGUGC------AUGUGCauc----UCG-AGCCCCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.