miRNA display CGI


Results 1 - 20 of 359 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21401 5' -56.3 NC_004812.1 + 72738 0.74 0.496007
Target:  5'- cCCACGaagcGCACGUccgGGGGCcCGGGGGg -3'
miRNA:   3'- aGGUGCa---UGUGCA---UCUCGaGCCCCCg -5'
21401 5' -56.3 NC_004812.1 + 102602 0.76 0.423034
Target:  5'- -gCACGUGCGCGUAcGAcGCgCGGGGGg -3'
miRNA:   3'- agGUGCAUGUGCAU-CU-CGaGCCCCCg -5'
21401 5' -56.3 NC_004812.1 + 129723 0.76 0.423034
Target:  5'- aCCGCGgcgGCGUcGGGC-CGGGGGCg -3'
miRNA:   3'- aGGUGCaugUGCAuCUCGaGCCCCCG- -5'
21401 5' -56.3 NC_004812.1 + 54763 0.76 0.423034
Target:  5'- cCCGCG-GCGCGcgGGcGGCUaCGGGGGCg -3'
miRNA:   3'- aGGUGCaUGUGCa-UC-UCGA-GCCCCCG- -5'
21401 5' -56.3 NC_004812.1 + 79391 0.75 0.431807
Target:  5'- cCCGCGUcggcCGCGccAGcuGGCUCGGGGGCc -3'
miRNA:   3'- aGGUGCAu---GUGCa-UC--UCGAGCCCCCG- -5'
21401 5' -56.3 NC_004812.1 + 91057 0.75 0.467926
Target:  5'- gUCCACGagaUGCGCGUcucgaagaccgGGGGCgaggGGGGGCg -3'
miRNA:   3'- -AGGUGC---AUGUGCA-----------UCUCGag--CCCCCG- -5'
21401 5' -56.3 NC_004812.1 + 1195 0.75 0.467926
Target:  5'- cUCCG-GUAUAUGUAGcucGGC-CGGGGGCg -3'
miRNA:   3'- -AGGUgCAUGUGCAUC---UCGaGCCCCCG- -5'
21401 5' -56.3 NC_004812.1 + 84317 0.75 0.467926
Target:  5'- gCCGCGU-CGCcggGGAGCgccccgggCGGGGGCa -3'
miRNA:   3'- aGGUGCAuGUGca-UCUCGa-------GCCCCCG- -5'
21401 5' -56.3 NC_004812.1 + 58673 0.74 0.477198
Target:  5'- aCUGCGgguuggGCugGcUGGAGCcCGGGGGCu -3'
miRNA:   3'- aGGUGCa-----UGugC-AUCUCGaGCCCCCG- -5'
21401 5' -56.3 NC_004812.1 + 71126 0.76 0.423034
Target:  5'- -gCGCGgGCGCcucgGGGGUUCGGGGGCg -3'
miRNA:   3'- agGUGCaUGUGca--UCUCGAGCCCCCG- -5'
21401 5' -56.3 NC_004812.1 + 121003 0.76 0.423034
Target:  5'- gCCcCGUccucGCGCGgcGGGC-CGGGGGCg -3'
miRNA:   3'- aGGuGCA----UGUGCauCUCGaGCCCCCG- -5'
21401 5' -56.3 NC_004812.1 + 42971 0.76 0.404964
Target:  5'- cCCGCGUGCGUGUguguaguggggggGGGGUgCGGGGGCg -3'
miRNA:   3'- aGGUGCAUGUGCA-------------UCUCGaGCCCCCG- -5'
21401 5' -56.3 NC_004812.1 + 95765 0.8 0.241132
Target:  5'- gCCGCGcACAccgagccCGUGGAGC-CGGGGGCg -3'
miRNA:   3'- aGGUGCaUGU-------GCAUCUCGaGCCCCCG- -5'
21401 5' -56.3 NC_004812.1 + 39836 0.79 0.284928
Target:  5'- gCCGCGUGCcCGUaggcggugcggGGGGC-CGGGGGCu -3'
miRNA:   3'- aGGUGCAUGuGCA-----------UCUCGaGCCCCCG- -5'
21401 5' -56.3 NC_004812.1 + 104786 0.77 0.334026
Target:  5'- gUCCAgGgGC-CGUAGGGCUggUGGGGGCg -3'
miRNA:   3'- -AGGUgCaUGuGCAUCUCGA--GCCCCCG- -5'
21401 5' -56.3 NC_004812.1 + 5520 0.77 0.356888
Target:  5'- gCCGCGcagcagggACACGgcGGGC-CGGGGGCc -3'
miRNA:   3'- aGGUGCa-------UGUGCauCUCGaGCCCCCG- -5'
21401 5' -56.3 NC_004812.1 + 36446 0.77 0.364748
Target:  5'- aCCGCGgcCGCGUugucgaGGAGCggGGGGGCc -3'
miRNA:   3'- aGGUGCauGUGCA------UCUCGagCCCCCG- -5'
21401 5' -56.3 NC_004812.1 + 35004 0.76 0.380826
Target:  5'- aCCGCGUugAgguCGgcGAGCUcggCGGGGGCc -3'
miRNA:   3'- aGGUGCAugU---GCauCUCGA---GCCCCCG- -5'
21401 5' -56.3 NC_004812.1 + 130821 0.76 0.381642
Target:  5'- cUCCGCGaGCGCGUcguccgccGGGGCgccgcccggggucggCGGGGGCg -3'
miRNA:   3'- -AGGUGCaUGUGCA--------UCUCGa--------------GCCCCCG- -5'
21401 5' -56.3 NC_004812.1 + 5410 0.76 0.39737
Target:  5'- cCCAgGgACGCGgcGGGC-CGGGGGCc -3'
miRNA:   3'- aGGUgCaUGUGCauCUCGaGCCCCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.