miRNA display CGI


Results 1 - 20 of 359 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21401 5' -56.3 NC_004812.1 + 122971 1.11 0.002254
Target:  5'- gUCCACGUACACGUAGAGCUCGGGGGCc -3'
miRNA:   3'- -AGGUGCAUGUGCAUCUCGAGCCCCCG- -5'
21401 5' -56.3 NC_004812.1 + 4214 0.84 0.129945
Target:  5'- aCCGCGgcgGCGUcGGGCUCGGGGGCg -3'
miRNA:   3'- aGGUGCaugUGCAuCUCGAGCCCCCG- -5'
21401 5' -56.3 NC_004812.1 + 35649 0.81 0.204091
Target:  5'- gCCGCGggcGCGCGcGGGGgUCGGGGGCu -3'
miRNA:   3'- aGGUGCa--UGUGCaUCUCgAGCCCCCG- -5'
21401 5' -56.3 NC_004812.1 + 127715 0.8 0.230405
Target:  5'- gCCACG-GCGCGgaccAGCUCGGGGGCc -3'
miRNA:   3'- aGGUGCaUGUGCauc-UCGAGCCCCCG- -5'
21401 5' -56.3 NC_004812.1 + 95765 0.8 0.241132
Target:  5'- gCCGCGcACAccgagccCGUGGAGC-CGGGGGCg -3'
miRNA:   3'- aGGUGCaUGU-------GCAUCUCGaGCCCCCG- -5'
21401 5' -56.3 NC_004812.1 + 10563 0.79 0.259524
Target:  5'- uUCUGCGUGC-CGgcGAGCggugcCGGGGGCa -3'
miRNA:   3'- -AGGUGCAUGuGCauCUCGa----GCCCCCG- -5'
21401 5' -56.3 NC_004812.1 + 39836 0.79 0.284928
Target:  5'- gCCGCGUGCcCGUaggcggugcggGGGGC-CGGGGGCu -3'
miRNA:   3'- aGGUGCAUGuGCA-----------UCUCGaGCCCCCG- -5'
21401 5' -56.3 NC_004812.1 + 138153 0.79 0.291578
Target:  5'- -gCACGUACACGcacgccgugcugUGGAGCcagaCGGGGGCg -3'
miRNA:   3'- agGUGCAUGUGC------------AUCUCGa---GCCCCCG- -5'
21401 5' -56.3 NC_004812.1 + 104786 0.77 0.334026
Target:  5'- gUCCAgGgGC-CGUAGGGCUggUGGGGGCg -3'
miRNA:   3'- -AGGUgCaUGuGCAUCUCGA--GCCCCCG- -5'
21401 5' -56.3 NC_004812.1 + 100809 0.77 0.349146
Target:  5'- gCCGCGUGCugGcgcguCUCGGGGGCg -3'
miRNA:   3'- aGGUGCAUGugCaucucGAGCCCCCG- -5'
21401 5' -56.3 NC_004812.1 + 36421 0.77 0.356888
Target:  5'- gCCGCGcagcagggACACGgcGGGC-CGGGGGCc -3'
miRNA:   3'- aGGUGCa-------UGUGCauCUCGaGCCCCCG- -5'
21401 5' -56.3 NC_004812.1 + 5520 0.77 0.356888
Target:  5'- gCCGCGcagcagggACACGgcGGGC-CGGGGGCc -3'
miRNA:   3'- aGGUGCa-------UGUGCauCUCGaGCCCCCG- -5'
21401 5' -56.3 NC_004812.1 + 20834 0.77 0.364748
Target:  5'- aUCCGCGUgaccgACGCGUGG-GCggagGGGGGCu -3'
miRNA:   3'- -AGGUGCA-----UGUGCAUCuCGag--CCCCCG- -5'
21401 5' -56.3 NC_004812.1 + 36446 0.77 0.364748
Target:  5'- aCCGCGgcCGCGUugucgaGGAGCggGGGGGCc -3'
miRNA:   3'- aGGUGCauGUGCA------UCUCGagCCCCCG- -5'
21401 5' -56.3 NC_004812.1 + 45243 0.77 0.364748
Target:  5'- aCCGCGacacaGCGCgGUGGGGuCUCGGGGGUc -3'
miRNA:   3'- aGGUGCa----UGUG-CAUCUC-GAGCCCCCG- -5'
21401 5' -56.3 NC_004812.1 + 35004 0.76 0.380826
Target:  5'- aCCGCGUugAgguCGgcGAGCUcggCGGGGGCc -3'
miRNA:   3'- aGGUGCAugU---GCauCUCGA---GCCCCCG- -5'
21401 5' -56.3 NC_004812.1 + 5313 0.76 0.381642
Target:  5'- cUCCGCGaGCGCGUcguccgccGGGGCgccgcccggggucggCGGGGGCg -3'
miRNA:   3'- -AGGUGCaUGUGCA--------UCUCGa--------------GCCCCCG- -5'
21401 5' -56.3 NC_004812.1 + 130821 0.76 0.381642
Target:  5'- cUCCGCGaGCGCGUcguccgccGGGGCgccgcccggggucggCGGGGGCg -3'
miRNA:   3'- -AGGUGCaUGUGCA--------UCUCGa--------------GCCCCCG- -5'
21401 5' -56.3 NC_004812.1 + 5410 0.76 0.39737
Target:  5'- cCCAgGgACGCGgcGGGC-CGGGGGCc -3'
miRNA:   3'- aGGUgCaUGUGCauCUCGaGCCCCCG- -5'
21401 5' -56.3 NC_004812.1 + 36311 0.76 0.39737
Target:  5'- cCCAgGgACGCGgcGGGC-CGGGGGCc -3'
miRNA:   3'- aGGUgCaUGUGCauCUCGaGCCCCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.