miRNA display CGI


Results 1 - 20 of 359 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21401 5' -56.3 NC_004812.1 + 7 0.71 0.654773
Target:  5'- cCCGCGUuuccggggcgcGCGCGUuuucGGGGggCGGGGGUu -3'
miRNA:   3'- aGGUGCA-----------UGUGCA----UCUCgaGCCCCCG- -5'
21401 5' -56.3 NC_004812.1 + 570 0.73 0.584156
Target:  5'- -gCGCGgcCGCGUGGAGC-CGcGGGCg -3'
miRNA:   3'- agGUGCauGUGCAUCUCGaGCcCCCG- -5'
21401 5' -56.3 NC_004812.1 + 1195 0.75 0.467926
Target:  5'- cUCCG-GUAUAUGUAGcucGGC-CGGGGGCg -3'
miRNA:   3'- -AGGUgCAUGUGCAUC---UCGaGCCCCCG- -5'
21401 5' -56.3 NC_004812.1 + 1955 0.71 0.684925
Target:  5'- gCCGCGcGCGCGccGGGCgcCGGGGGg -3'
miRNA:   3'- aGGUGCaUGUGCauCUCGa-GCCCCCg -5'
21401 5' -56.3 NC_004812.1 + 2311 0.71 0.654773
Target:  5'- cUCCGCGgaGgACG-GGGGCaUCGGGGGUc -3'
miRNA:   3'- -AGGUGCa-UgUGCaUCUCG-AGCCCCCG- -5'
21401 5' -56.3 NC_004812.1 + 3499 0.72 0.624461
Target:  5'- gCCGCGgGCGCGggcccGGGGCcggcggcccCGGGGGCg -3'
miRNA:   3'- aGGUGCaUGUGCa----UCUCGa--------GCCCCCG- -5'
21401 5' -56.3 NC_004812.1 + 3654 0.66 0.905547
Target:  5'- cCCGCGUcUGCGUcGGccAGCa-GGGGGCg -3'
miRNA:   3'- aGGUGCAuGUGCA-UC--UCGagCCCCCG- -5'
21401 5' -56.3 NC_004812.1 + 4214 0.84 0.129945
Target:  5'- aCCGCGgcgGCGUcGGGCUCGGGGGCg -3'
miRNA:   3'- aGGUGCaugUGCAuCUCGAGCCCCCG- -5'
21401 5' -56.3 NC_004812.1 + 4336 0.7 0.724491
Target:  5'- aUCGgGgccUACGUGGuGCUCGuGGGGCg -3'
miRNA:   3'- aGGUgCau-GUGCAUCuCGAGC-CCCCG- -5'
21401 5' -56.3 NC_004812.1 + 4684 0.66 0.899309
Target:  5'- gUCCACcuccgGCGCGccccAGAGCccCGGGcGGCu -3'
miRNA:   3'- -AGGUGca---UGUGCa---UCUCGa-GCCC-CCG- -5'
21401 5' -56.3 NC_004812.1 + 4724 0.69 0.753381
Target:  5'- cCCAgGccGC-CGUAGAGCacgcgcccCGGGGGCg -3'
miRNA:   3'- aGGUgCa-UGuGCAUCUCGa-------GCCCCCG- -5'
21401 5' -56.3 NC_004812.1 + 4934 0.68 0.849528
Target:  5'- cCCGCGgaggcgGCGCuggAGGGCggcCGGcGGGCg -3'
miRNA:   3'- aGGUGCa-----UGUGca-UCUCGa--GCC-CCCG- -5'
21401 5' -56.3 NC_004812.1 + 4996 0.71 0.674906
Target:  5'- -gC-CGUGCGcCGcAGGGCgggCGGGGGCg -3'
miRNA:   3'- agGuGCAUGU-GCaUCUCGa--GCCCCCG- -5'
21401 5' -56.3 NC_004812.1 + 5056 0.7 0.743843
Target:  5'- gUCACGgggGCcCGggcgGGAGaCUCGGGGGg -3'
miRNA:   3'- aGGUGCa--UGuGCa---UCUC-GAGCCCCCg -5'
21401 5' -56.3 NC_004812.1 + 5313 0.76 0.381642
Target:  5'- cUCCGCGaGCGCGUcguccgccGGGGCgccgcccggggucggCGGGGGCg -3'
miRNA:   3'- -AGGUGCaUGUGCA--------UCUCGa--------------GCCCCCG- -5'
21401 5' -56.3 NC_004812.1 + 5388 0.7 0.724491
Target:  5'- gUCGCG-GCGCG--GGGC-CGGGGGCg -3'
miRNA:   3'- aGGUGCaUGUGCauCUCGaGCCCCCG- -5'
21401 5' -56.3 NC_004812.1 + 5410 0.76 0.39737
Target:  5'- cCCAgGgACGCGgcGGGC-CGGGGGCc -3'
miRNA:   3'- aGGUgCaUGUGCauCUCGaGCCCCCG- -5'
21401 5' -56.3 NC_004812.1 + 5520 0.77 0.356888
Target:  5'- gCCGCGcagcagggACACGgcGGGC-CGGGGGCc -3'
miRNA:   3'- aGGUGCa-------UGUGCauCUCGaGCCCCCG- -5'
21401 5' -56.3 NC_004812.1 + 5614 0.69 0.790401
Target:  5'- cCCAgGggGC-CGgAGgcGGCUCGGGGGCc -3'
miRNA:   3'- aGGUgCa-UGuGCaUC--UCGAGCCCCCG- -5'
21401 5' -56.3 NC_004812.1 + 5672 0.73 0.564179
Target:  5'- cCCGCagggGCACGgGGGGC-CGGGGGUc -3'
miRNA:   3'- aGGUGca--UGUGCaUCUCGaGCCCCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.