miRNA display CGI


Results 1 - 20 of 379 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21402 3' -58.2 NC_004812.1 + 5951 0.66 0.788244
Target:  5'- --cAGGGGGcAGGGC-CCGgggaGGCCGCg -3'
miRNA:   3'- uucUUCCCCaUCUCGuGGC----UCGGCGg -5'
21402 3' -58.2 NC_004812.1 + 12288 0.66 0.827563
Target:  5'- -cGggGGGGcGGAGCgaaacccacgacgGCCucagcgacccgcaGGCCGCCa -3'
miRNA:   3'- uuCuuCCCCaUCUCG-------------UGGc------------UCGGCGG- -5'
21402 3' -58.2 NC_004812.1 + 102279 0.66 0.797251
Target:  5'- gGGGAGGGaugGGUAGGGCGagGGGCgGCa -3'
miRNA:   3'- -UUCUUCC---CCAUCUCGUggCUCGgCGg -5'
21402 3' -58.2 NC_004812.1 + 131647 0.66 0.814815
Target:  5'- gGGGAGGGGGgGGGGguCCccuuuCCGCCc -3'
miRNA:   3'- -UUCUUCCCCaUCUCguGGcuc--GGCGG- -5'
21402 3' -58.2 NC_004812.1 + 31740 0.66 0.806111
Target:  5'- cGAGAGgcgcGGGGcgGGGGCGCgGcGCCcGCCc -3'
miRNA:   3'- -UUCUU----CCCCa-UCUCGUGgCuCGG-CGG- -5'
21402 3' -58.2 NC_004812.1 + 32831 0.66 0.806111
Target:  5'- cGAGuGGGGGcggGGGGCgGCCcccaGGGCgGCCa -3'
miRNA:   3'- -UUCuUCCCCa--UCUCG-UGG----CUCGgCGG- -5'
21402 3' -58.2 NC_004812.1 + 5625 0.66 0.806111
Target:  5'- gGAGGcggcucGGGGGccGGGC-CCgGGGUCGCCg -3'
miRNA:   3'- -UUCU------UCCCCauCUCGuGG-CUCGGCGG- -5'
21402 3' -58.2 NC_004812.1 + 138238 0.66 0.814815
Target:  5'- -cGAuguGGGGcccgcGGGC-CCGGcGCCGCCg -3'
miRNA:   3'- uuCUu--CCCCau---CUCGuGGCU-CGGCGG- -5'
21402 3' -58.2 NC_004812.1 + 130757 0.66 0.806111
Target:  5'- -cGucGGGGc---GCGCCGAgucgGCCGCCg -3'
miRNA:   3'- uuCuuCCCCaucuCGUGGCU----CGGCGG- -5'
21402 3' -58.2 NC_004812.1 + 122056 0.66 0.788244
Target:  5'- cGGgcGGGacuuGGGCGCCGGGCCugggcuggGCCu -3'
miRNA:   3'- uUCuuCCCcau-CUCGUGGCUCGG--------CGG- -5'
21402 3' -58.2 NC_004812.1 + 121984 0.66 0.806111
Target:  5'- uGGGcuGGGccuGAGCGCCGGGCgggacuugggCGCCg -3'
miRNA:   3'- uUCUucCCCau-CUCGUGGCUCG----------GCGG- -5'
21402 3' -58.2 NC_004812.1 + 100404 0.66 0.788244
Target:  5'- cGGccGGaGGUcGAuGCGCCGcgaGGCCGCCc -3'
miRNA:   3'- uUCuuCC-CCAuCU-CGUGGC---UCGGCGG- -5'
21402 3' -58.2 NC_004812.1 + 91496 0.66 0.814815
Target:  5'- -uGAGGGcGGgcuuGGCgGCCGAGCCGgCg -3'
miRNA:   3'- uuCUUCC-CCauc-UCG-UGGCUCGGCgG- -5'
21402 3' -58.2 NC_004812.1 + 103145 0.66 0.797251
Target:  5'- -cGAccGGGcccgcugcgucUGGAGCGCgGgGGCCGCCg -3'
miRNA:   3'- uuCUucCCC-----------AUCUCGUGgC-UCGGCGG- -5'
21402 3' -58.2 NC_004812.1 + 93152 0.66 0.806111
Target:  5'- -cGAGGGaGG-AGGGCGCCgccccGAGCacgGCCg -3'
miRNA:   3'- uuCUUCC-CCaUCUCGUGG-----CUCGg--CGG- -5'
21402 3' -58.2 NC_004812.1 + 113163 0.66 0.814815
Target:  5'- -cGAGGGucGGcGGAGgGCCGcGUCGCCc -3'
miRNA:   3'- uuCUUCC--CCaUCUCgUGGCuCGGCGG- -5'
21402 3' -58.2 NC_004812.1 + 59650 0.66 0.788244
Target:  5'- -uGAGGGuGGUGuGGGCGCaggCGuGCCGCg -3'
miRNA:   3'- uuCUUCC-CCAU-CUCGUG---GCuCGGCGg -5'
21402 3' -58.2 NC_004812.1 + 154740 0.66 0.797251
Target:  5'- cGGGcGGGGGUcgcggaGGAGCggGCCGgGGCUGCg -3'
miRNA:   3'- -UUCuUCCCCA------UCUCG--UGGC-UCGGCGg -5'
21402 3' -58.2 NC_004812.1 + 72350 0.66 0.788244
Target:  5'- gGGGAGGGGGggcggGGGGUcucCCGcGUCGUCg -3'
miRNA:   3'- -UUCUUCCCCa----UCUCGu--GGCuCGGCGG- -5'
21402 3' -58.2 NC_004812.1 + 110505 0.66 0.806111
Target:  5'- -cGAGGGGcuggcGUGcGGGCGCCu-GCUGCCg -3'
miRNA:   3'- uuCUUCCC-----CAU-CUCGUGGcuCGGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.