miRNA display CGI


Results 1 - 20 of 379 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21402 3' -58.2 NC_004812.1 + 206 0.69 0.641511
Target:  5'- ---cGGGGG-AGGGC-CCGGGUCGCg -3'
miRNA:   3'- uucuUCCCCaUCUCGuGGCUCGGCGg -5'
21402 3' -58.2 NC_004812.1 + 262 0.71 0.530983
Target:  5'- gGAGGAGGGGgGGGucucccgcgcGCGCUccGCCGCCg -3'
miRNA:   3'- -UUCUUCCCCaUCU----------CGUGGcuCGGCGG- -5'
21402 3' -58.2 NC_004812.1 + 859 0.69 0.64151
Target:  5'- gGGGuccuGGGGGUccuGGGGguCCgGGGUCGCCg -3'
miRNA:   3'- -UUCu---UCCCCA---UCUCguGG-CUCGGCGG- -5'
21402 3' -58.2 NC_004812.1 + 892 0.68 0.702018
Target:  5'- ---cGGGGGUccuGGGGguCCgGGGUCGCCg -3'
miRNA:   3'- uucuUCCCCA---UCUCguGG-CUCGGCGG- -5'
21402 3' -58.2 NC_004812.1 + 918 0.68 0.702018
Target:  5'- ---cGGGGGUccuGGGGguCCgGGGUCGCCg -3'
miRNA:   3'- uucuUCCCCA---UCUCguGG-CUCGGCGG- -5'
21402 3' -58.2 NC_004812.1 + 944 0.68 0.702018
Target:  5'- ---cGGGGGUccuGGGGguCCgGGGUCGCCg -3'
miRNA:   3'- uucuUCCCCA---UCUCguGG-CUCGGCGG- -5'
21402 3' -58.2 NC_004812.1 + 970 0.68 0.702018
Target:  5'- ---cGGGGGUccuGGGGguCCgGGGUCGCCg -3'
miRNA:   3'- uucuUCCCCA---UCUCguGG-CUCGGCGG- -5'
21402 3' -58.2 NC_004812.1 + 1432 0.7 0.5999
Target:  5'- cGGGGAGGGGccGGGGCcgcgaggGCCGGGCacggcggcgaCGCCg -3'
miRNA:   3'- -UUCUUCCCCa-UCUCG-------UGGCUCG----------GCGG- -5'
21402 3' -58.2 NC_004812.1 + 1488 0.73 0.410661
Target:  5'- cGGgcGGcGGcGGAGCGCCGGccggcccgcGCCGCCg -3'
miRNA:   3'- uUCuuCC-CCaUCUCGUGGCU---------CGGCGG- -5'
21402 3' -58.2 NC_004812.1 + 1837 0.66 0.823356
Target:  5'- gGGGGAGGGGacaugcugaugAGAGCccGCCGggGGCCuCCa -3'
miRNA:   3'- -UUCUUCCCCa----------UCUCG--UGGC--UCGGcGG- -5'
21402 3' -58.2 NC_004812.1 + 1980 0.74 0.369071
Target:  5'- gGAGggGGGGaGGGGUGgCGGGucCCGCCg -3'
miRNA:   3'- -UUCuuCCCCaUCUCGUgGCUC--GGCGG- -5'
21402 3' -58.2 NC_004812.1 + 2064 0.67 0.782773
Target:  5'- gGGGAGGGGGcgcgccccccgcgucUaccaguccucGGGGCGgcCCGGGCCGCg -3'
miRNA:   3'- -UUCUUCCCC---------------A----------UCUCGU--GGCUCGGCGg -5'
21402 3' -58.2 NC_004812.1 + 3101 0.67 0.74131
Target:  5'- cGGGgcGGGGgAGGcGcCGCCGAGCuccuCGCCg -3'
miRNA:   3'- -UUCuuCCCCaUCU-C-GUGGCUCG----GCGG- -5'
21402 3' -58.2 NC_004812.1 + 3109 0.71 0.491388
Target:  5'- aGGGGAGGGGgagGGAGUGgUGgggagggugucgcGGCCGCCg -3'
miRNA:   3'- -UUCUUCCCCa--UCUCGUgGC-------------UCGGCGG- -5'
21402 3' -58.2 NC_004812.1 + 3318 0.75 0.301774
Target:  5'- gAGGAgccAGGGGaGGGGC-CCGAgggGCCGCCg -3'
miRNA:   3'- -UUCU---UCCCCaUCUCGuGGCU---CGGCGG- -5'
21402 3' -58.2 NC_004812.1 + 3531 0.71 0.492338
Target:  5'- gGGGgcGGGGccgcGGCGCCGGGCCGgCu -3'
miRNA:   3'- -UUCuuCCCCauc-UCGUGGCUCGGCgG- -5'
21402 3' -58.2 NC_004812.1 + 4657 0.67 0.769824
Target:  5'- ----cGGGGaGGGGCucGCCG-GCCGUCg -3'
miRNA:   3'- uucuuCCCCaUCUCG--UGGCuCGGCGG- -5'
21402 3' -58.2 NC_004812.1 + 4750 0.67 0.76889
Target:  5'- -cGggGGcGGcGGcucGGCGCCGGGCCacggcucGCCg -3'
miRNA:   3'- uuCuuCC-CCaUC---UCGUGGCUCGG-------CGG- -5'
21402 3' -58.2 NC_004812.1 + 5040 0.68 0.702018
Target:  5'- cGGGccGGGGgcgcgcgAGGGCGCCGcGCCcCCg -3'
miRNA:   3'- -UUCuuCCCCa------UCUCGUGGCuCGGcGG- -5'
21402 3' -58.2 NC_004812.1 + 5118 0.67 0.760428
Target:  5'- uGGGGuccGGGGGgcGGGCGCggaggcgggaGGGCCGCg -3'
miRNA:   3'- -UUCU---UCCCCauCUCGUGg---------CUCGGCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.