miRNA display CGI


Results 1 - 20 of 379 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21402 3' -58.2 NC_004812.1 + 136892 0.74 0.356386
Target:  5'- gAGGAGGGGGgcGAcggguacgccguuggGCccgaggccgACCGGGCCGCCc -3'
miRNA:   3'- -UUCUUCCCCauCU---------------CG---------UGGCUCGGCGG- -5'
21402 3' -58.2 NC_004812.1 + 122310 0.76 0.294909
Target:  5'- -cGggGGGaGgcGGGCGgCGAGUCGCCu -3'
miRNA:   3'- uuCuuCCC-CauCUCGUgGCUCGGCGG- -5'
21402 3' -58.2 NC_004812.1 + 3318 0.75 0.301774
Target:  5'- gAGGAgccAGGGGaGGGGC-CCGAgggGCCGCCg -3'
miRNA:   3'- -UUCU---UCCCCaUCUCGuGGCU---CGGCGG- -5'
21402 3' -58.2 NC_004812.1 + 7680 0.75 0.306652
Target:  5'- gGAGcGGGGGUGGGcgggcgcgggggucGCGCCGAGuCCGCg -3'
miRNA:   3'- -UUCuUCCCCAUCU--------------CGUGGCUC-GGCGg -5'
21402 3' -58.2 NC_004812.1 + 122560 0.75 0.323105
Target:  5'- cGGggGGGGgcggaggGGAGCGCgGcGGCCGCg -3'
miRNA:   3'- uUCuuCCCCa------UCUCGUGgC-UCGGCGg -5'
21402 3' -58.2 NC_004812.1 + 156368 0.75 0.33046
Target:  5'- gGGGggGGGGaGGAGaGCgGGGCCGCg -3'
miRNA:   3'- -UUCuuCCCCaUCUCgUGgCUCGGCGg -5'
21402 3' -58.2 NC_004812.1 + 48131 0.75 0.340965
Target:  5'- gGAGGAGcGGGUGGccguccucgaggcgcGGCGCCGGGCgGCg -3'
miRNA:   3'- -UUCUUC-CCCAUC---------------UCGUGGCUCGgCGg -5'
21402 3' -58.2 NC_004812.1 + 26773 0.74 0.34554
Target:  5'- gAGGgcGGGGUGGAGCACgcauCGGuaCGCCa -3'
miRNA:   3'- -UUCuuCCCCAUCUCGUG----GCUcgGCGG- -5'
21402 3' -58.2 NC_004812.1 + 35572 0.74 0.353263
Target:  5'- gAGGGAGGGGgcggcgGGGGCACCcGAcggcGaCCGCCg -3'
miRNA:   3'- -UUCUUCCCCa-----UCUCGUGG-CU----C-GGCGG- -5'
21402 3' -58.2 NC_004812.1 + 76720 0.76 0.288166
Target:  5'- gAAGuuGGGGUGGAG-GCCGgagagcgcGGCCGCCg -3'
miRNA:   3'- -UUCuuCCCCAUCUCgUGGC--------UCGGCGG- -5'
21402 3' -58.2 NC_004812.1 + 71784 0.77 0.256267
Target:  5'- -cGggGGGGcgGGGGuCGCCGAaGCCGUCg -3'
miRNA:   3'- uuCuuCCCCa-UCUC-GUGGCU-CGGCGG- -5'
21402 3' -58.2 NC_004812.1 + 5715 0.77 0.25566
Target:  5'- gGGGcGGGGGUcugccgcgggaggAGGGCGCCGGgcGCCGCCc -3'
miRNA:   3'- -UUCuUCCCCA-------------UCUCGUGGCU--CGGCGG- -5'
21402 3' -58.2 NC_004812.1 + 139692 0.79 0.173315
Target:  5'- cGAGGAGGGGgccGGAGaCGgCGAGCUGCCc -3'
miRNA:   3'- -UUCUUCCCCa--UCUC-GUgGCUCGGCGG- -5'
21402 3' -58.2 NC_004812.1 + 96441 0.79 0.191489
Target:  5'- -cGAGGGGGUGGAGCugCaguGGCUGCUg -3'
miRNA:   3'- uuCUUCCCCAUCUCGugGc--UCGGCGG- -5'
21402 3' -58.2 NC_004812.1 + 27726 0.78 0.206198
Target:  5'- cGAGggGGGGcGGGGgGCCGcggucagcgGGCCGCCc -3'
miRNA:   3'- -UUCuuCCCCaUCUCgUGGC---------UCGGCGG- -5'
21402 3' -58.2 NC_004812.1 + 100055 0.78 0.210797
Target:  5'- cGAGcGGGGGUcacccucGGAGUgugaucggggGCCGGGCCGCCg -3'
miRNA:   3'- -UUCuUCCCCA-------UCUCG----------UGGCUCGGCGG- -5'
21402 3' -58.2 NC_004812.1 + 117616 0.78 0.216538
Target:  5'- gGGGGAGGGGgGGcGGCG-CGGGCCGCCg -3'
miRNA:   3'- -UUCUUCCCCaUC-UCGUgGCUCGGCGG- -5'
21402 3' -58.2 NC_004812.1 + 155563 0.78 0.22732
Target:  5'- gGGGAGGGGGgagGGGcGCGCgCGGGCgGCCg -3'
miRNA:   3'- -UUCUUCCCCa--UCU-CGUG-GCUCGgCGG- -5'
21402 3' -58.2 NC_004812.1 + 6529 0.77 0.232879
Target:  5'- cAGGggGGGGcGGGGgGCCGAggggGCUGCCg -3'
miRNA:   3'- -UUCuuCCCCaUCUCgUGGCU----CGGCGG- -5'
21402 3' -58.2 NC_004812.1 + 54734 0.77 0.244341
Target:  5'- gGGGGAGGGGgccGGCGCgGGGCCGCa -3'
miRNA:   3'- -UUCUUCCCCaucUCGUGgCUCGGCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.