miRNA display CGI


Results 1 - 20 of 379 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21402 3' -58.2 NC_004812.1 + 122600 1.1 0.001434
Target:  5'- gAAGAAGGGGUAGAGCACCGAGCCGCCg -3'
miRNA:   3'- -UUCUUCCCCAUCUCGUGGCUCGGCGG- -5'
21402 3' -58.2 NC_004812.1 + 134681 0.93 0.021252
Target:  5'- cGAGGAGGGGggcGGAGcCGCCGAGCCGCCg -3'
miRNA:   3'- -UUCUUCCCCa--UCUC-GUGGCUCGGCGG- -5'
21402 3' -58.2 NC_004812.1 + 146470 0.8 0.152772
Target:  5'- uGGggGGGGUGGGcGUACCGGGCCucacgcugaacGCCa -3'
miRNA:   3'- uUCuuCCCCAUCU-CGUGGCUCGG-----------CGG- -5'
21402 3' -58.2 NC_004812.1 + 30376 0.8 0.156696
Target:  5'- gGGGGAGGGGaGGGGCGgggccggcgcCCGGGCUGCCg -3'
miRNA:   3'- -UUCUUCCCCaUCUCGU----------GGCUCGGCGG- -5'
21402 3' -58.2 NC_004812.1 + 155884 0.8 0.156696
Target:  5'- gGGGGAGGGGaGGGGCGgggccggcgcCCGGGCUGCCg -3'
miRNA:   3'- -UUCUUCCCCaUCUCGU----------GGCUCGGCGG- -5'
21402 3' -58.2 NC_004812.1 + 139692 0.79 0.173315
Target:  5'- cGAGGAGGGGgccGGAGaCGgCGAGCUGCCc -3'
miRNA:   3'- -UUCUUCCCCa--UCUC-GUgGCUCGGCGG- -5'
21402 3' -58.2 NC_004812.1 + 96441 0.79 0.191489
Target:  5'- -cGAGGGGGUGGAGCugCaguGGCUGCUg -3'
miRNA:   3'- uuCUUCCCCAUCUCGugGc--UCGGCGG- -5'
21402 3' -58.2 NC_004812.1 + 27726 0.78 0.206198
Target:  5'- cGAGggGGGGcGGGGgGCCGcggucagcgGGCCGCCc -3'
miRNA:   3'- -UUCuuCCCCaUCUCgUGGC---------UCGGCGG- -5'
21402 3' -58.2 NC_004812.1 + 71826 0.78 0.206198
Target:  5'- cGGAAGGGGgAGGGUgcggcgGCCGGGCgGCCg -3'
miRNA:   3'- uUCUUCCCCaUCUCG------UGGCUCGgCGG- -5'
21402 3' -58.2 NC_004812.1 + 100055 0.78 0.210797
Target:  5'- cGAGcGGGGGUcacccucGGAGUgugaucggggGCCGGGCCGCCg -3'
miRNA:   3'- -UUCuUCCCCA-------UCUCG----------UGGCUCGGCGG- -5'
21402 3' -58.2 NC_004812.1 + 117616 0.78 0.216538
Target:  5'- gGGGGAGGGGgGGcGGCG-CGGGCCGCCg -3'
miRNA:   3'- -UUCUUCCCCaUC-UCGUgGCUCGGCGG- -5'
21402 3' -58.2 NC_004812.1 + 148517 0.78 0.216538
Target:  5'- gGGGGAGGGGgGGcGGCG-CGGGCCGCCg -3'
miRNA:   3'- -UUCUUCCCCaUC-UCGUgGCUCGGCGG- -5'
21402 3' -58.2 NC_004812.1 + 155563 0.78 0.22732
Target:  5'- gGGGAGGGGGgagGGGcGCGCgCGGGCgGCCg -3'
miRNA:   3'- -UUCUUCCCCa--UCU-CGUG-GCUCGgCGG- -5'
21402 3' -58.2 NC_004812.1 + 30054 0.78 0.22732
Target:  5'- gGGGAGGGGGgagGGGcGCGCgCGGGCgGCCg -3'
miRNA:   3'- -UUCUUCCCCa--UCU-CGUG-GCUCGgCGG- -5'
21402 3' -58.2 NC_004812.1 + 37430 0.77 0.232879
Target:  5'- cAGGggGGGGcGGGGgGCCGAggggGCUGCCg -3'
miRNA:   3'- -UUCuuCCCCaUCUCgUGGCU----CGGCGG- -5'
21402 3' -58.2 NC_004812.1 + 6529 0.77 0.232879
Target:  5'- cAGGggGGGGcGGGGgGCCGAggggGCUGCCg -3'
miRNA:   3'- -UUCuuCCCCaUCUCgUGGCU----CGGCGG- -5'
21402 3' -58.2 NC_004812.1 + 54734 0.77 0.244341
Target:  5'- gGGGGAGGGGgccGGCGCgGGGCCGCa -3'
miRNA:   3'- -UUCUUCCCCaucUCGUGgCUCGGCGg -5'
21402 3' -58.2 NC_004812.1 + 17034 0.77 0.250246
Target:  5'- -uGAAGGGGUcggcggGGGGCGCCucggucccGGCCGCCg -3'
miRNA:   3'- uuCUUCCCCA------UCUCGUGGc-------UCGGCGG- -5'
21402 3' -58.2 NC_004812.1 + 36616 0.77 0.25566
Target:  5'- gGGGcGGGGGUcugccgcgggaggAGGGCGCCGGgcGCCGCCc -3'
miRNA:   3'- -UUCuUCCCCA-------------UCUCGUGGCU--CGGCGG- -5'
21402 3' -58.2 NC_004812.1 + 5715 0.77 0.25566
Target:  5'- gGGGcGGGGGUcugccgcgggaggAGGGCGCCGGgcGCCGCCc -3'
miRNA:   3'- -UUCuUCCCCA-------------UCUCGUGGCU--CGGCGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.