miRNA display CGI


Results 1 - 20 of 105 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21403 3' -49.1 NC_004812.1 + 148408 0.67 0.995248
Target:  5'- --uCGUGucugGCGCGUgcCUGCGGggGCg -3'
miRNA:   3'- gauGCACu---UGUGCGauGACGUCuaCG- -5'
21403 3' -49.1 NC_004812.1 + 147731 0.66 0.998294
Target:  5'- gUACGUGAugACGCgggguCcGCGGGacGCg -3'
miRNA:   3'- gAUGCACUugUGCGau---GaCGUCUa-CG- -5'
21403 3' -49.1 NC_004812.1 + 145940 0.7 0.97934
Target:  5'- -gACGUGGuugGCGCUGC-GCuGGGUGCg -3'
miRNA:   3'- gaUGCACUug-UGCGAUGaCG-UCUACG- -5'
21403 3' -49.1 NC_004812.1 + 144510 0.66 0.99795
Target:  5'- cCUGCGcGAgGCGCGCguggGCgacaGCGGaAUGCa -3'
miRNA:   3'- -GAUGCaCU-UGUGCGa---UGa---CGUC-UACG- -5'
21403 3' -49.1 NC_004812.1 + 142669 0.67 0.995944
Target:  5'- uCUGCGUGGGCuCGCccAC-GCAGAccGCg -3'
miRNA:   3'- -GAUGCACUUGuGCGa-UGaCGUCUa-CG- -5'
21403 3' -49.1 NC_004812.1 + 142150 0.67 0.99755
Target:  5'- aCUGCGUGGugAcCGggGCgacGCGGAUcGCg -3'
miRNA:   3'- -GAUGCACUugU-GCgaUGa--CGUCUA-CG- -5'
21403 3' -49.1 NC_004812.1 + 138556 0.72 0.94002
Target:  5'- cCU-CGUGAACGC-CUcGCUGCuGGUGCc -3'
miRNA:   3'- -GAuGCACUUGUGcGA-UGACGuCUACG- -5'
21403 3' -49.1 NC_004812.1 + 138416 0.69 0.988773
Target:  5'- -cGCGUGGACGCGggggGCUGCcGgcGCc -3'
miRNA:   3'- gaUGCACUUGUGCga--UGACGuCuaCG- -5'
21403 3' -49.1 NC_004812.1 + 138008 0.69 0.987061
Target:  5'- -aACGUGGACccccgggACGCcGCcggcGCGGGUGCg -3'
miRNA:   3'- gaUGCACUUG-------UGCGaUGa---CGUCUACG- -5'
21403 3' -49.1 NC_004812.1 + 137170 0.69 0.982428
Target:  5'- gUACGcGAGCuccgugcacgaggcgAgGCUGCUGCGGcgGCu -3'
miRNA:   3'- gAUGCaCUUG---------------UgCGAUGACGUCuaCG- -5'
21403 3' -49.1 NC_004812.1 + 135911 0.67 0.995944
Target:  5'- aCUACGa----GCGCUAcCUGCAGcUGCu -3'
miRNA:   3'- -GAUGCacuugUGCGAU-GACGUCuACG- -5'
21403 3' -49.1 NC_004812.1 + 135819 0.69 0.987225
Target:  5'- -gACGcGGGCGCGCc---GCAGGUGCu -3'
miRNA:   3'- gaUGCaCUUGUGCGaugaCGUCUACG- -5'
21403 3' -49.1 NC_004812.1 + 134463 0.77 0.728945
Target:  5'- -cGCGUGGACGCGCUGCUcaugcgccuguugcGCGcGUGCc -3'
miRNA:   3'- gaUGCACUUGUGCGAUGA--------------CGUcUACG- -5'
21403 3' -49.1 NC_004812.1 + 133967 0.67 0.996555
Target:  5'- -cACGUcGAGCGuguCGCUcGC-GCGGAUGCu -3'
miRNA:   3'- gaUGCA-CUUGU---GCGA-UGaCGUCUACG- -5'
21403 3' -49.1 NC_004812.1 + 132863 0.66 0.998294
Target:  5'- gCUugGUGu-CGCGCaugugGCggaagaaGCGGGUGCg -3'
miRNA:   3'- -GAugCACuuGUGCGa----UGa------CGUCUACG- -5'
21403 3' -49.1 NC_004812.1 + 130998 0.67 0.997593
Target:  5'- aCUGCGUgGGGCGCGCcgACgacgagaaggacgagGCGGGgcgGCg -3'
miRNA:   3'- -GAUGCA-CUUGUGCGa-UGa--------------CGUCUa--CG- -5'
21403 3' -49.1 NC_004812.1 + 129805 0.67 0.995944
Target:  5'- -cGCGUacGCGCGCcgcagGCUGguGAUGa -3'
miRNA:   3'- gaUGCAcuUGUGCGa----UGACguCUACg -5'
21403 3' -49.1 NC_004812.1 + 129682 0.73 0.912096
Target:  5'- -gGCGgugGAccucuACGCGCUGggGCAGGUGCu -3'
miRNA:   3'- gaUGCa--CU-----UGUGCGAUgaCGUCUACG- -5'
21403 3' -49.1 NC_004812.1 + 123895 0.72 0.944818
Target:  5'- -cGCG-GGACGCGCUGggGgAGGUGCu -3'
miRNA:   3'- gaUGCaCUUGUGCGAUgaCgUCUACG- -5'
21403 3' -49.1 NC_004812.1 + 121797 1.14 0.006649
Target:  5'- gCUACGUGAACACGCUACUGCAGAUGCa -3'
miRNA:   3'- -GAUGCACUUGUGCGAUGACGUCUACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.