miRNA display CGI


Results 1 - 20 of 500 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21403 5' -61.6 NC_004812.1 + 128809 0.66 0.66483
Target:  5'- gCGGGucgaAGGCGaGCGCGGC-GcgCCagGCCUc -3'
miRNA:   3'- -GCCC----UCCGC-CGCGUCGaCuaGG--UGGG- -5'
21403 5' -61.6 NC_004812.1 + 25583 0.66 0.707487
Target:  5'- gGGGAGGaCGGCggggacgccuuccccGCGGCcGccgCCGCCg -3'
miRNA:   3'- gCCCUCC-GCCG---------------CGUCGaCua-GGUGGg -5'
21403 5' -61.6 NC_004812.1 + 139127 0.66 0.662875
Target:  5'- cCGGGAGcgccaccGCGGCauccgccGCGGUcGAgagcgCCACCCc -3'
miRNA:   3'- -GCCCUC-------CGCCG-------CGUCGaCUa----GGUGGG- -5'
21403 5' -61.6 NC_004812.1 + 124912 0.66 0.655046
Target:  5'- cCGGGcGGCGGCgGgGGCgg--CgGCCCa -3'
miRNA:   3'- -GCCCuCCGCCG-CgUCGacuaGgUGGG- -5'
21403 5' -61.6 NC_004812.1 + 16576 0.66 0.652107
Target:  5'- uGGGAGGCGauuuuuaagaaaacGCGCGuGCaGAcCUACCUg -3'
miRNA:   3'- gCCCUCCGC--------------CGCGU-CGaCUaGGUGGG- -5'
21403 5' -61.6 NC_004812.1 + 51149 0.66 0.655046
Target:  5'- gGGGAGGC-GCGC-GCc---CCGCCCc -3'
miRNA:   3'- gCCCUCCGcCGCGuCGacuaGGUGGG- -5'
21403 5' -61.6 NC_004812.1 + 155735 0.66 0.655046
Target:  5'- uGGGGGGCGcGCGCGgGCgGGgcucgCgGCCg -3'
miRNA:   3'- gCCCUCCGC-CGCGU-CGaCUa----GgUGGg -5'
21403 5' -61.6 NC_004812.1 + 99787 0.66 0.663853
Target:  5'- gGGGAcggaguuGuGCGGCGCgccgccAGCUGcgCCGCgCg -3'
miRNA:   3'- gCCCU-------C-CGCCGCG------UCGACuaGGUGgG- -5'
21403 5' -61.6 NC_004812.1 + 47853 0.66 0.66483
Target:  5'- gGGGAGaGgGGCGCucGGUcGGUuuuaaCCGCCCc -3'
miRNA:   3'- gCCCUC-CgCCGCG--UCGaCUA-----GGUGGG- -5'
21403 5' -61.6 NC_004812.1 + 62730 0.66 0.655046
Target:  5'- aGGccGAGGUGGaccgGCGGCUGggCUGCCg -3'
miRNA:   3'- gCC--CUCCGCCg---CGUCGACuaGGUGGg -5'
21403 5' -61.6 NC_004812.1 + 108626 0.66 0.655046
Target:  5'- --cGAGGCGcGCGU-GCUGG-CCGCCUa -3'
miRNA:   3'- gccCUCCGC-CGCGuCGACUaGGUGGG- -5'
21403 5' -61.6 NC_004812.1 + 122753 0.66 0.655046
Target:  5'- gCGGGAGaG-GGCGC-GCacGGUgCGCCCg -3'
miRNA:   3'- -GCCCUC-CgCCGCGuCGa-CUAgGUGGG- -5'
21403 5' -61.6 NC_004812.1 + 133919 0.66 0.655046
Target:  5'- cCGGGcgGGGgGGaCGCGG--GGUCCGCUCg -3'
miRNA:   3'- -GCCC--UCCgCC-GCGUCgaCUAGGUGGG- -5'
21403 5' -61.6 NC_004812.1 + 73589 0.66 0.654067
Target:  5'- uGGGGGGUcaGGCGCuGCacgaagagGAUCgccccggCGCCCg -3'
miRNA:   3'- gCCCUCCG--CCGCGuCGa-------CUAG-------GUGGG- -5'
21403 5' -61.6 NC_004812.1 + 23819 0.66 0.671665
Target:  5'- gCGcGGGGCGGCGacccggggccggccCGGCccgGcgCCGCCCu -3'
miRNA:   3'- -GCcCUCCGCCGC--------------GUCGa--CuaGGUGGG- -5'
21403 5' -61.6 NC_004812.1 + 1953 0.66 0.673615
Target:  5'- uCGGGGGGacgGGUGCaucgucacugaggGGCUGGUaucgaCCGCCa -3'
miRNA:   3'- -GCCCUCCg--CCGCG-------------UCGACUA-----GGUGGg -5'
21403 5' -61.6 NC_004812.1 + 26688 0.66 0.66483
Target:  5'- gGGcGGGGCuGCGUaggcGGCgacgGAUCCACgCa -3'
miRNA:   3'- gCC-CUCCGcCGCG----UCGa---CUAGGUGgG- -5'
21403 5' -61.6 NC_004812.1 + 128228 0.66 0.655046
Target:  5'- -cGGAGGCcagcacGGCGCGGCgcaGGUCgCGCgCg -3'
miRNA:   3'- gcCCUCCG------CCGCGUCGa--CUAG-GUGgG- -5'
21403 5' -61.6 NC_004812.1 + 129216 0.66 0.66483
Target:  5'- uCGGcGGcGGCGGCGcCGGCgGAgCgCACCUg -3'
miRNA:   3'- -GCC-CU-CCGCCGC-GUCGaCUaG-GUGGG- -5'
21403 5' -61.6 NC_004812.1 + 66308 0.66 0.655046
Target:  5'- gCGGcuGGCGGCGCccaGGCgcccgUCGCCCg -3'
miRNA:   3'- -GCCcuCCGCCGCG---UCGacua-GGUGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.