miRNA display CGI


Results 1 - 20 of 500 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21403 5' -61.6 NC_004812.1 + 7273 0.74 0.256077
Target:  5'- gGGGAGGgGGCgGCGGCcgcgugUGAggCCGCCUg -3'
miRNA:   3'- gCCCUCCgCCG-CGUCG------ACUa-GGUGGG- -5'
21403 5' -61.6 NC_004812.1 + 31748 0.76 0.207595
Target:  5'- gCGGGGcGGgGGCGCGGCgc--CCGCCCc -3'
miRNA:   3'- -GCCCU-CCgCCGCGUCGacuaGGUGGG- -5'
21403 5' -61.6 NC_004812.1 + 83865 0.76 0.207595
Target:  5'- gCGGGGGGCGGCGCug-----CCGCCCc -3'
miRNA:   3'- -GCCCUCCGCCGCGucgacuaGGUGGG- -5'
21403 5' -61.6 NC_004812.1 + 129412 0.75 0.212564
Target:  5'- gCGGGcgcGGCGGCGCGGCggcgGggCCGCgCg -3'
miRNA:   3'- -GCCCu--CCGCCGCGUCGa---CuaGGUGgG- -5'
21403 5' -61.6 NC_004812.1 + 72052 0.75 0.227554
Target:  5'- gCGGGGGGUcgggggcgcugggGGCgGCGGCUGuuucgCCGCCCc -3'
miRNA:   3'- -GCCCUCCG-------------CCG-CGUCGACua---GGUGGG- -5'
21403 5' -61.6 NC_004812.1 + 81676 0.75 0.228086
Target:  5'- cCGGGGGGUGGacgggggGCAGCUGggCCACg- -3'
miRNA:   3'- -GCCCUCCGCCg------CGUCGACuaGGUGgg -5'
21403 5' -61.6 NC_004812.1 + 121770 0.75 0.228086
Target:  5'- cCGGGAGGCgGGgGCAGCgaGggCCGCUUg -3'
miRNA:   3'- -GCCCUCCG-CCgCGUCGa-CuaGGUGGG- -5'
21403 5' -61.6 NC_004812.1 + 5731 0.75 0.233469
Target:  5'- gCGGGAGGagGGCGCcgGGCg---CCGCCCa -3'
miRNA:   3'- -GCCCUCCg-CCGCG--UCGacuaGGUGGG- -5'
21403 5' -61.6 NC_004812.1 + 43889 0.75 0.244557
Target:  5'- aGGGAGGCGGCGCAGggggagaagGGUCCGg-- -3'
miRNA:   3'- gCCCUCCGCCGCGUCga-------CUAGGUggg -5'
21403 5' -61.6 NC_004812.1 + 150694 0.76 0.197958
Target:  5'- cCGGGcGGCGuCGCGGCgGcUCCGCCCg -3'
miRNA:   3'- -GCCCuCCGCcGCGUCGaCuAGGUGGG- -5'
21403 5' -61.6 NC_004812.1 + 117622 0.76 0.197958
Target:  5'- gGGGGGGCGGCGCGGg----CCGCCg -3'
miRNA:   3'- gCCCUCCGCCGCGUCgacuaGGUGGg -5'
21403 5' -61.6 NC_004812.1 + 50646 0.76 0.197958
Target:  5'- uGGGGGGCGGgGCccGGCgacucgCCGCCCg -3'
miRNA:   3'- gCCCUCCGCCgCG--UCGacua--GGUGGG- -5'
21403 5' -61.6 NC_004812.1 + 64152 0.8 0.112583
Target:  5'- gGGGAcGGCGGCGCGGCgGGcUCCGCgCg -3'
miRNA:   3'- gCCCU-CCGCCGCGUCGaCU-AGGUGgG- -5'
21403 5' -61.6 NC_004812.1 + 121300 0.79 0.124438
Target:  5'- uCGGGcAGGCGaGUGCGGCgGGaCCACCCg -3'
miRNA:   3'- -GCCC-UCCGC-CGCGUCGaCUaGGUGGG- -5'
21403 5' -61.6 NC_004812.1 + 81937 0.79 0.134078
Target:  5'- gGGGAgguaGGCGGCGCGGCacgUGGUCCGCa- -3'
miRNA:   3'- gCCCU----CCGCCGCGUCG---ACUAGGUGgg -5'
21403 5' -61.6 NC_004812.1 + 54995 0.78 0.137441
Target:  5'- uCGGGcgaccguagucgGGGCGGCGCAGCUcGAcuucUCCGCaCCg -3'
miRNA:   3'- -GCCC------------UCCGCCGCGUCGA-CU----AGGUG-GG- -5'
21403 5' -61.6 NC_004812.1 + 124064 0.78 0.155446
Target:  5'- aCGGGGGaGCGGCGCGuCaucGAUCCGCCUa -3'
miRNA:   3'- -GCCCUC-CGCCGCGUcGa--CUAGGUGGG- -5'
21403 5' -61.6 NC_004812.1 + 109389 0.77 0.159295
Target:  5'- uCGcGGAGGCGGaGCGGCUGuugGUCC-CCCa -3'
miRNA:   3'- -GC-CCUCCGCCgCGUCGAC---UAGGuGGG- -5'
21403 5' -61.6 NC_004812.1 + 130652 0.77 0.17556
Target:  5'- gGGGAcGGCGGCGuCGGCccgcGGUCCggGCCCg -3'
miRNA:   3'- gCCCU-CCGCCGC-GUCGa---CUAGG--UGGG- -5'
21403 5' -61.6 NC_004812.1 + 30821 0.77 0.179852
Target:  5'- gGGGGGGCaGgGCGGCgccagGcgCCGCCCg -3'
miRNA:   3'- gCCCUCCGcCgCGUCGa----CuaGGUGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.