miRNA display CGI


Results 1 - 20 of 500 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21403 5' -61.6 NC_004812.1 + 54 0.74 0.280448
Target:  5'- gCGGGcgcGGCGGCGCGGCg---CCACgCg -3'
miRNA:   3'- -GCCCu--CCGCCGCGUCGacuaGGUGgG- -5'
21403 5' -61.6 NC_004812.1 + 97 0.7 0.455488
Target:  5'- aCGGGccgGGGCGcGCGCggGGCcGGgagcCCGCCCg -3'
miRNA:   3'- -GCCC---UCCGC-CGCG--UCGaCUa---GGUGGG- -5'
21403 5' -61.6 NC_004812.1 + 335 0.66 0.703646
Target:  5'- uCGGGAGGUGcguccaCGC-GCUcg-CCACCCu -3'
miRNA:   3'- -GCCCUCCGCc-----GCGuCGAcuaGGUGGG- -5'
21403 5' -61.6 NC_004812.1 + 1215 0.74 0.262003
Target:  5'- cCGGG-GGCGGCGCcGCgGGggcuccuccCCGCCCg -3'
miRNA:   3'- -GCCCuCCGCCGCGuCGaCUa--------GGUGGG- -5'
21403 5' -61.6 NC_004812.1 + 1247 0.72 0.326749
Target:  5'- nCGGGcGGCGcCGCGGCcgcccguUGGUCCGCCg -3'
miRNA:   3'- -GCCCuCCGCcGCGUCG-------ACUAGGUGGg -5'
21403 5' -61.6 NC_004812.1 + 1321 0.67 0.645246
Target:  5'- gCGGGcgguccgcGGGCGGUccGCgGGC-GGUCCGCCg -3'
miRNA:   3'- -GCCC--------UCCGCCG--CG-UCGaCUAGGUGGg -5'
21403 5' -61.6 NC_004812.1 + 1487 0.72 0.341922
Target:  5'- gCGGGcGGCGGCGgAGCgccggCCgGCCCg -3'
miRNA:   3'- -GCCCuCCGCCGCgUCGacua-GG-UGGG- -5'
21403 5' -61.6 NC_004812.1 + 1779 0.68 0.589408
Target:  5'- uCGGGGGGcCGGCcgcuccgccccgccGCAGCauggcggacgucgGggCCGCCCc -3'
miRNA:   3'- -GCCCUCC-GCCG--------------CGUCGa------------CuaGGUGGG- -5'
21403 5' -61.6 NC_004812.1 + 1953 0.66 0.673615
Target:  5'- uCGGGGGGacgGGUGCaucgucacugaggGGCUGGUaucgaCCGCCa -3'
miRNA:   3'- -GCCCUCCg--CCGCG-------------UCGACUA-----GGUGGg -5'
21403 5' -61.6 NC_004812.1 + 1983 0.67 0.606018
Target:  5'- gGGGGGGaGGgGUGGCgGGUcCCGCCg -3'
miRNA:   3'- gCCCUCCgCCgCGUCGaCUA-GGUGGg -5'
21403 5' -61.6 NC_004812.1 + 2064 0.68 0.538282
Target:  5'- gGGGAGGgGGCGCGccccccGC--GUCUACCa -3'
miRNA:   3'- gCCCUCCgCCGCGU------CGacUAGGUGGg -5'
21403 5' -61.6 NC_004812.1 + 2140 0.67 0.645246
Target:  5'- gGGGAGGCcccgcgGGCGgGGCUcgcggcggcGG-CCACCUc -3'
miRNA:   3'- gCCCUCCG------CCGCgUCGA---------CUaGGUGGG- -5'
21403 5' -61.6 NC_004812.1 + 2362 0.69 0.482377
Target:  5'- uCGGGcccGGCGcGCGCGGCgucgcGGUCCAgCgCCa -3'
miRNA:   3'- -GCCCu--CCGC-CGCGUCGa----CUAGGU-G-GG- -5'
21403 5' -61.6 NC_004812.1 + 2404 0.67 0.645246
Target:  5'- aCGGGccgcaGCGGCGCGGCcag-CC-CCCa -3'
miRNA:   3'- -GCCCuc---CGCCGCGUCGacuaGGuGGG- -5'
21403 5' -61.6 NC_004812.1 + 2720 0.66 0.655046
Target:  5'- -cGGAGGCcagcacGGCGCGGCgcaGGUCgCGCgCg -3'
miRNA:   3'- gcCCUCCG------CCGCGUCGa--CUAG-GUGgG- -5'
21403 5' -61.6 NC_004812.1 + 3094 0.68 0.586485
Target:  5'- aGGcGGGCGGgGCGGggGAggcgCCGCCg -3'
miRNA:   3'- gCCcUCCGCCgCGUCgaCUa---GGUGGg -5'
21403 5' -61.6 NC_004812.1 + 3301 0.66 0.66483
Target:  5'- gCGGGucgaAGGCGaGCGCGGC-GcgCCagGCCUc -3'
miRNA:   3'- -GCCC----UCCGC-CGCGUCGaCuaGG--UGGG- -5'
21403 5' -61.6 NC_004812.1 + 3574 0.67 0.606018
Target:  5'- gCGGGcAGGCGGCGgCGGCggcgGGcgggCgCGCCg -3'
miRNA:   3'- -GCCC-UCCGCCGC-GUCGa---CUa---G-GUGGg -5'
21403 5' -61.6 NC_004812.1 + 3634 0.7 0.446706
Target:  5'- cCGGcGGGC-GCGCGGCg---CCGCCCg -3'
miRNA:   3'- -GCCcUCCGcCGCGUCGacuaGGUGGG- -5'
21403 5' -61.6 NC_004812.1 + 3708 0.66 0.66483
Target:  5'- uCGGcGGcGGCGGCGcCGGCgGAgCgCACCUg -3'
miRNA:   3'- -GCC-CU-CCGCCGC-GUCGaCUaG-GUGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.