miRNA display CGI


Results 1 - 20 of 500 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21403 5' -61.6 NC_004812.1 + 121834 1.1 0.000836
Target:  5'- gCGGGAGGCGGCGCAGCUGAUCCACCCc -3'
miRNA:   3'- -GCCCUCCGCCGCGUCGACUAGGUGGG- -5'
21403 5' -61.6 NC_004812.1 + 136996 0.86 0.044691
Target:  5'- cCGGGAGGCGGCGCgAGC-GAUUCGCCg -3'
miRNA:   3'- -GCCCUCCGCCGCG-UCGaCUAGGUGGg -5'
21403 5' -61.6 NC_004812.1 + 125198 0.83 0.067661
Target:  5'- gGGGAGGUGGCGCGGCgccugccGGUCCugCUc -3'
miRNA:   3'- gCCCUCCGCCGCGUCGa------CUAGGugGG- -5'
21403 5' -61.6 NC_004812.1 + 124251 0.81 0.08967
Target:  5'- gCGGGGGGCGcGCGCGGCgGcgCC-CCCg -3'
miRNA:   3'- -GCCCUCCGC-CGCGUCGaCuaGGuGGG- -5'
21403 5' -61.6 NC_004812.1 + 64152 0.8 0.112583
Target:  5'- gGGGAcGGCGGCGCGGCgGGcUCCGCgCg -3'
miRNA:   3'- gCCCU-CCGCCGCGUCGaCU-AGGUGgG- -5'
21403 5' -61.6 NC_004812.1 + 152201 0.79 0.124438
Target:  5'- uCGGGcAGGCGaGUGCGGCgGGaCCACCCg -3'
miRNA:   3'- -GCCC-UCCGC-CGCGUCGaCUaGGUGGG- -5'
21403 5' -61.6 NC_004812.1 + 121300 0.79 0.124438
Target:  5'- uCGGGcAGGCGaGUGCGGCgGGaCCACCCg -3'
miRNA:   3'- -GCCC-UCCGC-CGCGUCGaCUaGGUGGG- -5'
21403 5' -61.6 NC_004812.1 + 81937 0.79 0.134078
Target:  5'- gGGGAgguaGGCGGCGCGGCacgUGGUCCGCa- -3'
miRNA:   3'- gCCCU----CCGCCGCGUCG---ACUAGGUGgg -5'
21403 5' -61.6 NC_004812.1 + 54995 0.78 0.137441
Target:  5'- uCGGGcgaccguagucgGGGCGGCGCAGCUcGAcuucUCCGCaCCg -3'
miRNA:   3'- -GCCC------------UCCGCCGCGUCGA-CU----AGGUG-GG- -5'
21403 5' -61.6 NC_004812.1 + 87727 0.78 0.140882
Target:  5'- gCGGGAGGCGGCGCGGgCgccgGggCCGCggaCCg -3'
miRNA:   3'- -GCCCUCCGCCGCGUC-Ga---CuaGGUG---GG- -5'
21403 5' -61.6 NC_004812.1 + 61271 0.78 0.144401
Target:  5'- gGGGAGGgGGgGguGCUGuggaaCCGCCCg -3'
miRNA:   3'- gCCCUCCgCCgCguCGACua---GGUGGG- -5'
21403 5' -61.6 NC_004812.1 + 124064 0.78 0.155446
Target:  5'- aCGGGGGaGCGGCGCGuCaucGAUCCGCCUa -3'
miRNA:   3'- -GCCCUC-CGCCGCGUcGa--CUAGGUGGG- -5'
21403 5' -61.6 NC_004812.1 + 154965 0.78 0.155446
Target:  5'- aCGGGGGaGCGGCGCGuCaucGAUCCGCCUa -3'
miRNA:   3'- -GCCCUC-CGCCGCGUcGa--CUAGGUGGG- -5'
21403 5' -61.6 NC_004812.1 + 109389 0.77 0.159295
Target:  5'- uCGcGGAGGCGGaGCGGCUGuugGUCC-CCCa -3'
miRNA:   3'- -GC-CCUCCGCCgCGUCGAC---UAGGuGGG- -5'
21403 5' -61.6 NC_004812.1 + 130652 0.77 0.17556
Target:  5'- gGGGAcGGCGGCGuCGGCccgcGGUCCggGCCCg -3'
miRNA:   3'- gCCCU-CCGCCGC-GUCGa---CUAGG--UGGG- -5'
21403 5' -61.6 NC_004812.1 + 5143 0.77 0.17556
Target:  5'- gGGGAcGGCGGCGuCGGCccgcGGUCCggGCCCg -3'
miRNA:   3'- gCCCU-CCGCCGC-GUCGa---CUAGG--UGGG- -5'
21403 5' -61.6 NC_004812.1 + 63050 0.77 0.179852
Target:  5'- gGGGAGGCgGGgGCGuCUGGcUCCGCCCc -3'
miRNA:   3'- gCCCUCCG-CCgCGUcGACU-AGGUGGG- -5'
21403 5' -61.6 NC_004812.1 + 125710 0.77 0.179852
Target:  5'- cCGGGAGGUgcccgcggGGCGCGgggccgcgcGCUGAgCCGCCCc -3'
miRNA:   3'- -GCCCUCCG--------CCGCGU---------CGACUaGGUGGG- -5'
21403 5' -61.6 NC_004812.1 + 30821 0.77 0.179852
Target:  5'- gGGGGGGCaGgGCGGCgccagGcgCCGCCCg -3'
miRNA:   3'- gCCCUCCGcCgCGUCGa----CuaGGUGGG- -5'
21403 5' -61.6 NC_004812.1 + 136870 0.76 0.184236
Target:  5'- cCGGGcuGGUGGCGCGGaucgagGGUCUGCCCg -3'
miRNA:   3'- -GCCCu-CCGCCGCGUCga----CUAGGUGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.