miRNA display CGI


Results 1 - 20 of 218 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21404 5' -59.1 NC_004812.1 + 117028 0.7 0.541417
Target:  5'- cCCCGcccGGC-CUGgcaccggGCCGCCGGUUGCa -3'
miRNA:   3'- -GGGCa--CCGcGACa------UGGUGGUCGACGc -5'
21404 5' -59.1 NC_004812.1 + 44186 0.71 0.503153
Target:  5'- -gCGcGGCGCUGgggGCCACCGccuCUGCGa -3'
miRNA:   3'- ggGCaCCGCGACa--UGGUGGUc--GACGC- -5'
21404 5' -59.1 NC_004812.1 + 120018 0.71 0.503153
Target:  5'- cCCCGUGGCcCUGggagACCcCCGGCcccccgugccccUGCGg -3'
miRNA:   3'- -GGGCACCGcGACa---UGGuGGUCG------------ACGC- -5'
21404 5' -59.1 NC_004812.1 + 74663 0.71 0.522149
Target:  5'- cCCCGaUGGCGCccugGUACUugGCCGGgaGCc -3'
miRNA:   3'- -GGGC-ACCGCGa---CAUGG--UGGUCgaCGc -5'
21404 5' -59.1 NC_004812.1 + 37233 0.71 0.531752
Target:  5'- gCCGUugugcagcauGGCGUUGagcguguugGCCACCAGCUGgGc -3'
miRNA:   3'- gGGCA----------CCGCGACa--------UGGUGGUCGACgC- -5'
21404 5' -59.1 NC_004812.1 + 34651 0.71 0.531752
Target:  5'- aCCCGggccaccGGCGCcaggGCCAgcgcgucccCCAGCUGCGa -3'
miRNA:   3'- -GGGCa------CCGCGaca-UGGU---------GGUCGACGC- -5'
21404 5' -59.1 NC_004812.1 + 111748 0.71 0.531752
Target:  5'- cCCCGUGaCcuucCUGUACCACCGGCccGCa -3'
miRNA:   3'- -GGGCACcGc---GACAUGGUGGUCGa-CGc -5'
21404 5' -59.1 NC_004812.1 + 111481 0.7 0.541417
Target:  5'- cCUCGcGGCGCUGUGggaCACgCAGgUGCGa -3'
miRNA:   3'- -GGGCaCCGCGACAUg--GUG-GUCgACGC- -5'
21404 5' -59.1 NC_004812.1 + 73489 0.7 0.541417
Target:  5'- gCCGUGGCGCcaGU-CCGCCAGgC-GCGu -3'
miRNA:   3'- gGGCACCGCGa-CAuGGUGGUC-GaCGC- -5'
21404 5' -59.1 NC_004812.1 + 114276 0.71 0.493768
Target:  5'- aCCCGcGGCGCcg-ACaCACCcccgGGCUGCGg -3'
miRNA:   3'- -GGGCaCCGCGacaUG-GUGG----UCGACGC- -5'
21404 5' -59.1 NC_004812.1 + 28799 0.71 0.484463
Target:  5'- gCCGUGGCGCggcgccugcUGUuuaauaGCCuggucccgccCCAGCUGCGg -3'
miRNA:   3'- gGGCACCGCG---------ACA------UGGu---------GGUCGACGC- -5'
21404 5' -59.1 NC_004812.1 + 99796 0.72 0.475244
Target:  5'- gUUGUgcGGCGC---GCCGCCAGCUGCGc -3'
miRNA:   3'- gGGCA--CCGCGacaUGGUGGUCGACGC- -5'
21404 5' -59.1 NC_004812.1 + 37746 0.76 0.266604
Target:  5'- cCCCGgGaGCGUgaaGUccACCACCAGCUGCGc -3'
miRNA:   3'- -GGGCaC-CGCGa--CA--UGGUGGUCGACGC- -5'
21404 5' -59.1 NC_004812.1 + 67632 0.73 0.396603
Target:  5'- gCCGUGGCcagggacgGCUGgggccccugGCCGCCGGCcGCGc -3'
miRNA:   3'- gGGCACCG--------CGACa--------UGGUGGUCGaCGC- -5'
21404 5' -59.1 NC_004812.1 + 130441 0.73 0.396603
Target:  5'- gCCCGcggaggcGGCGCUGgaggGCgGCCGGCggGCGg -3'
miRNA:   3'- -GGGCa------CCGCGACa---UGgUGGUCGa-CGC- -5'
21404 5' -59.1 NC_004812.1 + 56888 0.73 0.413355
Target:  5'- gCCCG-GGC-CUGUGCgGCCAGCccuggGCGc -3'
miRNA:   3'- -GGGCaCCGcGACAUGgUGGUCGa----CGC- -5'
21404 5' -59.1 NC_004812.1 + 94289 0.72 0.44724
Target:  5'- gCCCG-GGCGUgcgccuggGUGCgcuugguCGCCGGCUGCGc -3'
miRNA:   3'- -GGGCaCCGCGa-------CAUG-------GUGGUCGACGC- -5'
21404 5' -59.1 NC_004812.1 + 100384 0.72 0.457073
Target:  5'- gCCGgggGGCGCgagGCCACCGGCcggaggucgaUGCGc -3'
miRNA:   3'- gGGCa--CCGCGacaUGGUGGUCG----------ACGC- -5'
21404 5' -59.1 NC_004812.1 + 76444 0.72 0.466113
Target:  5'- gCCCGcGGCGCUGU-CCGCgAGg-GCGa -3'
miRNA:   3'- -GGGCaCCGCGACAuGGUGgUCgaCGC- -5'
21404 5' -59.1 NC_004812.1 + 16174 0.72 0.466113
Target:  5'- gCCCGacugggGGCGCUcgAUCGCCAGCaGCGc -3'
miRNA:   3'- -GGGCa-----CCGCGAcaUGGUGGUCGaCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.