miRNA display CGI


Results 1 - 20 of 315 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21405 5' -65.9 NC_004812.1 + 4361 0.66 0.465318
Target:  5'- gGCGCGCGUGcaacauggcgcgcGCCCuGGCCGaggcguCGCccgGGUg -3'
miRNA:   3'- -UGCGCGCAC-------------CGGGcCCGGU------GCGa--CCA- -5'
21405 5' -65.9 NC_004812.1 + 75273 0.66 0.460956
Target:  5'- -aGCGCGUccuuGGCcucgcccaggucgcgCCGGGCCACGaaGGc -3'
miRNA:   3'- ugCGCGCA----CCG---------------GGCCCGGUGCgaCCa -5'
21405 5' -65.9 NC_004812.1 + 76582 0.66 0.44886
Target:  5'- -gGC-CGUGGCCaC-GGCCGCGCUGc- -3'
miRNA:   3'- ugCGcGCACCGG-GcCCGGUGCGACca -5'
21405 5' -65.9 NC_004812.1 + 125471 0.66 0.440329
Target:  5'- cCGCGCGgGaGCCuUGGGCCcCGCgGGa -3'
miRNA:   3'- uGCGCGCaC-CGG-GCCCGGuGCGaCCa -5'
21405 5' -65.9 NC_004812.1 + 121955 0.66 0.448003
Target:  5'- gGCG-GCGggcugGGCCugagcggCGGGCCugGgCUGGg -3'
miRNA:   3'- -UGCgCGCa----CCGG-------GCCCGGugC-GACCa -5'
21405 5' -65.9 NC_004812.1 + 122093 0.66 0.44886
Target:  5'- aGCGCcgggGCG-GGCCUGGGUCAgGgcCUGGg -3'
miRNA:   3'- -UGCG----CGCaCCGGGCCCGGUgC--GACCa -5'
21405 5' -65.9 NC_004812.1 + 121913 0.66 0.44886
Target:  5'- -gGCGCG-GGCCugagguCGGGCCugaGCGCcGGg -3'
miRNA:   3'- ugCGCGCaCCGG------GCCCGG---UGCGaCCa -5'
21405 5' -65.9 NC_004812.1 + 154193 0.66 0.456616
Target:  5'- uGCGCGCGcugggggcUGGCCgCGccgcugcGGCCcgucuaccugGCGCUGGa -3'
miRNA:   3'- -UGCGCGC--------ACCGG-GC-------CCGG----------UGCGACCa -5'
21405 5' -65.9 NC_004812.1 + 136552 0.66 0.464444
Target:  5'- cGCGCGCGacgcggggccugaUGGCcuaCCGGGacgcucgccgccuCUACGCUGGc -3'
miRNA:   3'- -UGCGCGC-------------ACCG---GGCCC-------------GGUGCGACCa -5'
21405 5' -65.9 NC_004812.1 + 155105 0.66 0.457483
Target:  5'- uCGCGCGgcGGCgCGGGCCG-GCcGGc -3'
miRNA:   3'- uGCGCGCa-CCGgGCCCGGUgCGaCCa -5'
21405 5' -65.9 NC_004812.1 + 103185 0.66 0.466193
Target:  5'- -aGCGCGgccccgGGCUCcucgguGGCCGCGCUGcGg -3'
miRNA:   3'- ugCGCGCa-----CCGGGc-----CCGGUGCGAC-Ca -5'
21405 5' -65.9 NC_004812.1 + 131512 0.66 0.44886
Target:  5'- aACGCGCGUcGGCgCGcGGCgGCGCc--- -3'
miRNA:   3'- -UGCGCGCA-CCGgGC-CCGgUGCGacca -5'
21405 5' -65.9 NC_004812.1 + 74359 0.66 0.44886
Target:  5'- -gGCGCG-GGCgCGGGCgGCGg-GGUc -3'
miRNA:   3'- ugCGCGCaCCGgGCCCGgUGCgaCCA- -5'
21405 5' -65.9 NC_004812.1 + 5821 0.66 0.457483
Target:  5'- -gGCGCGgcgGGCUcugCGGGCCggcggcGCGCUcGGg -3'
miRNA:   3'- ugCGCGCa--CCGG---GCCCGG------UGCGA-CCa -5'
21405 5' -65.9 NC_004812.1 + 45185 0.66 0.44886
Target:  5'- cGCGUGCGUcacccaGGCCCGGGa-GCGCa--- -3'
miRNA:   3'- -UGCGCGCA------CCGGGCCCggUGCGacca -5'
21405 5' -65.9 NC_004812.1 + 26723 0.66 0.44886
Target:  5'- -gGCGCGUcGCacggCGGGCCguggGCGUUGGUc -3'
miRNA:   3'- ugCGCGCAcCGg---GCCCGG----UGCGACCA- -5'
21405 5' -65.9 NC_004812.1 + 108914 0.66 0.440329
Target:  5'- uACGCcCGggGGCCCGcGGCCGCG--GGUu -3'
miRNA:   3'- -UGCGcGCa-CCGGGC-CCGGUGCgaCCA- -5'
21405 5' -65.9 NC_004812.1 + 50482 0.66 0.440329
Target:  5'- gGCGCGUGUGGaCgCCGGGCgCcgagGCGCUc-- -3'
miRNA:   3'- -UGCGCGCACC-G-GGCCCG-G----UGCGAcca -5'
21405 5' -65.9 NC_004812.1 + 73165 0.66 0.440329
Target:  5'- cACGCGC-UGGCCCgaGGGCCgguacaggGCGUgGGc -3'
miRNA:   3'- -UGCGCGcACCGGG--CCCGG--------UGCGaCCa -5'
21405 5' -65.9 NC_004812.1 + 117644 0.66 0.44886
Target:  5'- -gGCGCGgcggGGUCgCGGGCCggccggGCGCcGGg -3'
miRNA:   3'- ugCGCGCa---CCGG-GCCCGG------UGCGaCCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.