miRNA display CGI


Results 1 - 20 of 315 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21405 5' -65.9 NC_004812.1 + 39 0.68 0.345721
Target:  5'- aACGCGCGgcgGGCCgCGGGCgCggcgGCGC-GGc -3'
miRNA:   3'- -UGCGCGCa--CCGG-GCCCG-G----UGCGaCCa -5'
21405 5' -65.9 NC_004812.1 + 77 0.72 0.189492
Target:  5'- cGCGCGCGcacucgcgagggacgGGCCgGGGCgCGCGCgGGg -3'
miRNA:   3'- -UGCGCGCa--------------CCGGgCCCG-GUGCGaCCa -5'
21405 5' -65.9 NC_004812.1 + 140 0.73 0.180351
Target:  5'- cGCGCGCGUGGCgCCGcgccGCCGCGCccgcGGc -3'
miRNA:   3'- -UGCGCGCACCG-GGCc---CGGUGCGa---CCa -5'
21405 5' -65.9 NC_004812.1 + 194 0.75 0.11629
Target:  5'- cGCGCGCGccgccgggggagGGCCCGGGUCGCGCa--- -3'
miRNA:   3'- -UGCGCGCa-----------CCGGGCCCGGUGCGacca -5'
21405 5' -65.9 NC_004812.1 + 441 0.67 0.43189
Target:  5'- cGCGCGCGcccgccgcGaGCCCGGGCCgccggcGCGcCUGcGUg -3'
miRNA:   3'- -UGCGCGCa-------C-CGGGCCCGG------UGC-GAC-CA- -5'
21405 5' -65.9 NC_004812.1 + 662 0.67 0.391164
Target:  5'- aACGC-CGc-GCCCGGGCgGCGCgagGGg -3'
miRNA:   3'- -UGCGcGCacCGGGCCCGgUGCGa--CCa -5'
21405 5' -65.9 NC_004812.1 + 1429 0.69 0.291225
Target:  5'- cCGCGgGgaggGGCCgGGGCCGCGa-GGg -3'
miRNA:   3'- uGCGCgCa---CCGGgCCCGGUGCgaCCa -5'
21405 5' -65.9 NC_004812.1 + 1796 0.67 0.423546
Target:  5'- aGCGCGUGcaucgGGCCCcGGCUGCGCg--- -3'
miRNA:   3'- -UGCGCGCa----CCGGGcCCGGUGCGacca -5'
21405 5' -65.9 NC_004812.1 + 2072 0.72 0.199968
Target:  5'- gGCGCGCcccccgcgucuaccaGUccucggggcGGCCCGGGCCGCGCUc-- -3'
miRNA:   3'- -UGCGCG---------------CA---------CCGGGCCCGGUGCGAcca -5'
21405 5' -65.9 NC_004812.1 + 2577 0.66 0.483866
Target:  5'- cACGgGCGUgucgGGCCCGaGGCgcgugCGCGCgcGGUa -3'
miRNA:   3'- -UGCgCGCA----CCGGGC-CCG-----GUGCGa-CCA- -5'
21405 5' -65.9 NC_004812.1 + 3079 0.68 0.375589
Target:  5'- cGCGCGCGUcGGUCCaggcGGGCgGgGCgGGg -3'
miRNA:   3'- -UGCGCGCA-CCGGG----CCCGgUgCGaCCa -5'
21405 5' -65.9 NC_004812.1 + 3224 0.68 0.367961
Target:  5'- gGCGCGCGgcgGGCcgaaggcgcggCCGGaGCCGgGCUcGGg -3'
miRNA:   3'- -UGCGCGCa--CCG-----------GGCC-CGGUgCGA-CCa -5'
21405 5' -65.9 NC_004812.1 + 3489 0.67 0.407153
Target:  5'- -aGCGCGgcgGGCCgCGGGCgCGgGCccgGGg -3'
miRNA:   3'- ugCGCGCa--CCGG-GCCCG-GUgCGa--CCa -5'
21405 5' -65.9 NC_004812.1 + 3730 0.69 0.324461
Target:  5'- -aGCGCaccUGGCgCGGGCCGCGCg--- -3'
miRNA:   3'- ugCGCGc--ACCGgGCCCGGUGCGacca -5'
21405 5' -65.9 NC_004812.1 + 4361 0.66 0.465318
Target:  5'- gGCGCGCGUGcaacauggcgcgcGCCCuGGCCGaggcguCGCccgGGUg -3'
miRNA:   3'- -UGCGCGCAC-------------CGGGcCCGGU------GCGa--CCA- -5'
21405 5' -65.9 NC_004812.1 + 4428 0.67 0.423546
Target:  5'- -gGUGCGgcacGGCgCGGGCCACGgUgccGGUg -3'
miRNA:   3'- ugCGCGCa---CCGgGCCCGGUGCgA---CCA- -5'
21405 5' -65.9 NC_004812.1 + 4754 0.69 0.310838
Target:  5'- gGCG-GCGgcucGGCgCCGGGCCAcggcucgcCGCUGGc -3'
miRNA:   3'- -UGCgCGCa---CCG-GGCCCGGU--------GCGACCa -5'
21405 5' -65.9 NC_004812.1 + 4910 0.72 0.186401
Target:  5'- cGCGCGCGccgccgcucgcugcGGCCCGcggaGGCgGCGCUGGa -3'
miRNA:   3'- -UGCGCGCa-------------CCGGGC----CCGgUGCGACCa -5'
21405 5' -65.9 NC_004812.1 + 5821 0.66 0.457483
Target:  5'- -gGCGCGgcgGGCUcugCGGGCCggcggcGCGCUcGGg -3'
miRNA:   3'- ugCGCGCa--CCGG---GCCCGG------UGCGA-CCa -5'
21405 5' -65.9 NC_004812.1 + 6003 0.66 0.44886
Target:  5'- aACGCGCGUcGGCgCGcGGCgGCGCc--- -3'
miRNA:   3'- -UGCGCGCA-CCGgGC-CCGgUGCGacca -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.