miRNA display CGI


Results 1 - 20 of 315 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21405 5' -65.9 NC_004812.1 + 77 0.72 0.189492
Target:  5'- cGCGCGCGcacucgcgagggacgGGCCgGGGCgCGCGCgGGg -3'
miRNA:   3'- -UGCGCGCa--------------CCGGgCCCG-GUGCGaCCa -5'
21405 5' -65.9 NC_004812.1 + 155577 0.73 0.167971
Target:  5'- gGCGCGCGcgGGCggCCGGGCCcuCGCgGGg -3'
miRNA:   3'- -UGCGCGCa-CCG--GGCCCGGu-GCGaCCa -5'
21405 5' -65.9 NC_004812.1 + 155742 0.73 0.172011
Target:  5'- cGCGCGCGggcggGGCUCGcGGCCGCGg-GGa -3'
miRNA:   3'- -UGCGCGCa----CCGGGC-CCGGUGCgaCCa -5'
21405 5' -65.9 NC_004812.1 + 61216 0.73 0.180351
Target:  5'- gGCGCGCG-GGCuuCCGGGUCGCGCg--- -3'
miRNA:   3'- -UGCGCGCaCCG--GGCCCGGUGCGacca -5'
21405 5' -65.9 NC_004812.1 + 125649 0.73 0.180351
Target:  5'- cGCGCGCGUGGCgCCGcgccGCCGCGCccgcGGc -3'
miRNA:   3'- -UGCGCGCACCG-GGCc---CGGUGCGa---CCa -5'
21405 5' -65.9 NC_004812.1 + 68214 0.72 0.184654
Target:  5'- cGCGCGCGgccGGCCgGGGgUGCGCgGGg -3'
miRNA:   3'- -UGCGCGCa--CCGGgCCCgGUGCGaCCa -5'
21405 5' -65.9 NC_004812.1 + 130418 0.72 0.186401
Target:  5'- cGCGCGCGccgccgcucgcugcGGCCCGcggaGGCgGCGCUGGa -3'
miRNA:   3'- -UGCGCGCa-------------CCGGGC----CCGgUGCGACCa -5'
21405 5' -65.9 NC_004812.1 + 44975 0.72 0.189047
Target:  5'- gGCGCGCaggaGGCCCGcGGCCACGagccaGGUg -3'
miRNA:   3'- -UGCGCGca--CCGGGC-CCGGUGCga---CCA- -5'
21405 5' -65.9 NC_004812.1 + 46285 0.72 0.189047
Target:  5'- cCGCGCGgggcGGCCggaggccgcggCGGGCCGCGCgGGc -3'
miRNA:   3'- uGCGCGCa---CCGG-----------GCCCGGUGCGaCCa -5'
21405 5' -65.9 NC_004812.1 + 97399 0.74 0.156358
Target:  5'- gGCGCGCG-GGCCuCGGGC-GCGUacUGGUg -3'
miRNA:   3'- -UGCGCGCaCCGG-GCCCGgUGCG--ACCA- -5'
21405 5' -65.9 NC_004812.1 + 31441 0.74 0.146887
Target:  5'- cACGCGCucUGGUCCGGGUCgaacucguagcgcacGCGCUGGg -3'
miRNA:   3'- -UGCGCGc-ACCGGGCCCGG---------------UGCGACCa -5'
21405 5' -65.9 NC_004812.1 + 49414 0.75 0.119762
Target:  5'- cCGCGcCGUGGcCCCGGGCCGcCGCgucgUGGa -3'
miRNA:   3'- uGCGC-GCACC-GGGCCCGGU-GCG----ACCa -5'
21405 5' -65.9 NC_004812.1 + 16202 0.81 0.04501
Target:  5'- aGCGCGCGgcGGaCCCGGGCCGCGCgccGGa -3'
miRNA:   3'- -UGCGCGCa-CC-GGGCCCGGUGCGa--CCa -5'
21405 5' -65.9 NC_004812.1 + 154868 0.78 0.072862
Target:  5'- -gGCGCG-GGCUCGGGCCGCGgaGGc -3'
miRNA:   3'- ugCGCGCaCCGGGCCCGGUGCgaCCa -5'
21405 5' -65.9 NC_004812.1 + 94276 0.78 0.076616
Target:  5'- gGCGCGCGccgcGGCCCGGGCgUGCGcCUGGg -3'
miRNA:   3'- -UGCGCGCa---CCGGGCCCG-GUGC-GACCa -5'
21405 5' -65.9 NC_004812.1 + 122174 0.78 0.078562
Target:  5'- -gGCGCG-GGCCUGGGCCugGguCUGGUg -3'
miRNA:   3'- ugCGCGCaCCGGGCCCGGugC--GACCA- -5'
21405 5' -65.9 NC_004812.1 + 122424 0.77 0.084688
Target:  5'- gACGCGCGgugGGCCCGGGCgGCGuCUccucGGg -3'
miRNA:   3'- -UGCGCGCa--CCGGGCCCGgUGC-GA----CCa -5'
21405 5' -65.9 NC_004812.1 + 156164 0.77 0.09592
Target:  5'- gACGCGCG-GGaCCgGGGCCGCGCgaGGa -3'
miRNA:   3'- -UGCGCGCaCC-GGgCCCGGUGCGa-CCa -5'
21405 5' -65.9 NC_004812.1 + 94351 0.76 0.105906
Target:  5'- cGCGCGCGgcgcGGCCCcGG-CGCGCUGGUu -3'
miRNA:   3'- -UGCGCGCa---CCGGGcCCgGUGCGACCA- -5'
21405 5' -65.9 NC_004812.1 + 125703 0.75 0.11629
Target:  5'- cGCGCGCGccgccgggggagGGCCCGGGUCGCGCa--- -3'
miRNA:   3'- -UGCGCGCa-----------CCGGGCCCGGUGCGacca -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.