miRNA display CGI


Results 1 - 20 of 315 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21405 5' -65.9 NC_004812.1 + 117387 1.06 0.000618
Target:  5'- cACGCGCGUGGCCCGGGCCACGCUGGUg -3'
miRNA:   3'- -UGCGCGCACCGGGCCCGGUGCGACCA- -5'
21405 5' -65.9 NC_004812.1 + 39224 0.82 0.040636
Target:  5'- ---aGCGUGGCCCGGGCCACGCgcgUGGc -3'
miRNA:   3'- ugcgCGCACCGGGCCCGGUGCG---ACCa -5'
21405 5' -65.9 NC_004812.1 + 16202 0.81 0.04501
Target:  5'- aGCGCGCGgcGGaCCCGGGCCGCGCgccGGa -3'
miRNA:   3'- -UGCGCGCa-CC-GGGCCCGGUGCGa--CCa -5'
21405 5' -65.9 NC_004812.1 + 154868 0.78 0.072862
Target:  5'- -gGCGCG-GGCUCGGGCCGCGgaGGc -3'
miRNA:   3'- ugCGCGCaCCGGGCCCGGUGCgaCCa -5'
21405 5' -65.9 NC_004812.1 + 29360 0.78 0.072862
Target:  5'- -gGCGCG-GGCUCGGGCCGCGgaGGc -3'
miRNA:   3'- ugCGCGCaCCGGGCCCGGUGCgaCCa -5'
21405 5' -65.9 NC_004812.1 + 94276 0.78 0.076616
Target:  5'- gGCGCGCGccgcGGCCCGGGCgUGCGcCUGGg -3'
miRNA:   3'- -UGCGCGCa---CCGGGCCCG-GUGC-GACCa -5'
21405 5' -65.9 NC_004812.1 + 153075 0.78 0.078562
Target:  5'- -gGCGCG-GGCCUGGGCCugGguCUGGUg -3'
miRNA:   3'- ugCGCGCaCCGGGCCCGGugC--GACCA- -5'
21405 5' -65.9 NC_004812.1 + 122174 0.78 0.078562
Target:  5'- -gGCGCG-GGCCUGGGCCugGguCUGGUg -3'
miRNA:   3'- ugCGCGCaCCGGGCCCGGugC--GACCA- -5'
21405 5' -65.9 NC_004812.1 + 79576 0.77 0.082597
Target:  5'- cGCGCGCGUGcgcGCCauaGaGGCCAUGCUGGa -3'
miRNA:   3'- -UGCGCGCAC---CGGg--C-CCGGUGCGACCa -5'
21405 5' -65.9 NC_004812.1 + 153325 0.77 0.084688
Target:  5'- gACGCGCGgugGGCCCGGGCgGCGuCUccucGGg -3'
miRNA:   3'- -UGCGCGCa--CCGGGCCCGgUGC-GA----CCa -5'
21405 5' -65.9 NC_004812.1 + 122424 0.77 0.084688
Target:  5'- gACGCGCGgugGGCCCGGGCgGCGuCUccucGGg -3'
miRNA:   3'- -UGCGCGCa--CCGGGCCCGgUGC-GA----CCa -5'
21405 5' -65.9 NC_004812.1 + 156164 0.77 0.09592
Target:  5'- gACGCGCG-GGaCCgGGGCCGCGCgaGGa -3'
miRNA:   3'- -UGCGCGCaCC-GGgCCCGGUGCGa-CCa -5'
21405 5' -65.9 NC_004812.1 + 30656 0.77 0.09592
Target:  5'- gACGCGCG-GGaCCgGGGCCGCGCgaGGa -3'
miRNA:   3'- -UGCGCGCaCC-GGgCCCGGUGCGa-CCa -5'
21405 5' -65.9 NC_004812.1 + 94351 0.76 0.105906
Target:  5'- cGCGCGCGgcgcGGCCCcGG-CGCGCUGGUu -3'
miRNA:   3'- -UGCGCGCa---CCGGGcCCgGUGCGACCA- -5'
21405 5' -65.9 NC_004812.1 + 194 0.75 0.11629
Target:  5'- cGCGCGCGccgccgggggagGGCCCGGGUCGCGCa--- -3'
miRNA:   3'- -UGCGCGCa-----------CCGGGCCCGGUGCGacca -5'
21405 5' -65.9 NC_004812.1 + 125703 0.75 0.11629
Target:  5'- cGCGCGCGccgccgggggagGGCCCGGGUCGCGCa--- -3'
miRNA:   3'- -UGCGCGCa-----------CCGGGCCCGGUGCGacca -5'
21405 5' -65.9 NC_004812.1 + 138055 0.75 0.119762
Target:  5'- gGCGgaGCG-GGCCCGcGCCGCGCUGGc -3'
miRNA:   3'- -UGCg-CGCaCCGGGCcCGGUGCGACCa -5'
21405 5' -65.9 NC_004812.1 + 49414 0.75 0.119762
Target:  5'- cCGCGcCGUGGcCCCGGGCCGcCGCgucgUGGa -3'
miRNA:   3'- uGCGC-GCACC-GGGCCCGGU-GCG----ACCa -5'
21405 5' -65.9 NC_004812.1 + 112836 0.75 0.119762
Target:  5'- gACGCaggGCGUGGCCuCGGcGCUcacGCGCUGGg -3'
miRNA:   3'- -UGCG---CGCACCGG-GCC-CGG---UGCGACCa -5'
21405 5' -65.9 NC_004812.1 + 136844 0.75 0.132043
Target:  5'- gGCGCGCGUcGCCUGGGacccccgcaCCGgGCUGGUg -3'
miRNA:   3'- -UGCGCGCAcCGGGCCC---------GGUgCGACCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.