miRNA display CGI


Results 1 - 20 of 610 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21406 3' -62.4 NC_004812.1 + 55932 0.66 0.639164
Target:  5'- gGCGAggUGGCCUgGC-CCCCGaCGAGgAGc -3'
miRNA:   3'- -CGCU--GCCGGG-CGuGGGGCaGCUCgUC- -5'
21406 3' -62.4 NC_004812.1 + 3254 0.66 0.639164
Target:  5'- aGgGGC-GCCCGCGCCCCcgccgccCGAGgAGa -3'
miRNA:   3'- -CgCUGcCGGGCGUGGGGca-----GCUCgUC- -5'
21406 3' -62.4 NC_004812.1 + 14769 0.66 0.62947
Target:  5'- gGCGACGacacGCUCGCGuCCCCGcCGAcccGCGc -3'
miRNA:   3'- -CGCUGC----CGGGCGU-GGGGCaGCU---CGUc -5'
21406 3' -62.4 NC_004812.1 + 90159 0.66 0.62947
Target:  5'- cGCGGCGGCCCuGgACgCCaUCGAGa-- -3'
miRNA:   3'- -CGCUGCCGGG-CgUGgGGcAGCUCguc -5'
21406 3' -62.4 NC_004812.1 + 75523 0.66 0.62947
Target:  5'- gGUGcACGuccGCCCGCAgCgCGUCGAGgCGGu -3'
miRNA:   3'- -CGC-UGC---CGGGCGUgGgGCAGCUC-GUC- -5'
21406 3' -62.4 NC_004812.1 + 95582 0.66 0.62947
Target:  5'- cGC-ACGG-CCGCGCCCgCGcgCGGGCGc -3'
miRNA:   3'- -CGcUGCCgGGCGUGGG-GCa-GCUCGUc -5'
21406 3' -62.4 NC_004812.1 + 28543 0.66 0.633348
Target:  5'- aGCGAgCGGCCCG-ACCUCGggCGccgcgauguucggccGGCAGc -3'
miRNA:   3'- -CGCU-GCCGGGCgUGGGGCa-GC---------------UCGUC- -5'
21406 3' -62.4 NC_004812.1 + 105006 0.66 0.62947
Target:  5'- cGCGGCGcccCUCGCGCCCCG-CGGuGCc- -3'
miRNA:   3'- -CGCUGCc--GGGCGUGGGGCaGCU-CGuc -5'
21406 3' -62.4 NC_004812.1 + 84900 0.66 0.638195
Target:  5'- aGCGACuucccggcccuGGCCCGacagcaCGCCCCcccgggccgccggGUCGAGUGGc -3'
miRNA:   3'- -CGCUG-----------CCGGGC------GUGGGG-------------CAGCUCGUC- -5'
21406 3' -62.4 NC_004812.1 + 7655 0.66 0.62947
Target:  5'- cGCGAagcugcgGGCCCGCGggCCGg-GAGCGGg -3'
miRNA:   3'- -CGCUg------CCGGGCGUggGGCagCUCGUC- -5'
21406 3' -62.4 NC_004812.1 + 98431 0.66 0.628501
Target:  5'- uGCGGCGGCCgcggggcggcaggCGCgggggcGCCCCGUCcauGCGc -3'
miRNA:   3'- -CGCUGCCGG-------------GCG------UGGGGCAGcu-CGUc -5'
21406 3' -62.4 NC_004812.1 + 112934 0.66 0.62947
Target:  5'- aGCG-CGGCCCGCgcagcGCCgUGUCGcuGguGa -3'
miRNA:   3'- -CGCuGCCGGGCG-----UGGgGCAGCu-CguC- -5'
21406 3' -62.4 NC_004812.1 + 153360 0.66 0.687417
Target:  5'- gGCGGgGGCgCggGCGCCCCuggCGGGCGc -3'
miRNA:   3'- -CGCUgCCGgG--CGUGGGGca-GCUCGUc -5'
21406 3' -62.4 NC_004812.1 + 76255 0.66 0.639164
Target:  5'- gGCGGCcaGGCCCGCGCgCgCCGccUCGAcgGCGc -3'
miRNA:   3'- -CGCUG--CCGGGCGUG-G-GGC--AGCU--CGUc -5'
21406 3' -62.4 NC_004812.1 + 80065 0.66 0.62947
Target:  5'- cCGGCcgaGGCCCGCguccacGCCCCGcccUCGAcCAGg -3'
miRNA:   3'- cGCUG---CCGGGCG------UGGGGC---AGCUcGUC- -5'
21406 3' -62.4 NC_004812.1 + 141950 0.66 0.639164
Target:  5'- gGC-ACGGCCCGaagGCgCCGUucaCGAGCAc -3'
miRNA:   3'- -CGcUGCCGGGCg--UGgGGCA---GCUCGUc -5'
21406 3' -62.4 NC_004812.1 + 119340 0.66 0.62947
Target:  5'- aCG-CuGCCCGCGuCCCUGgCGGGCGGc -3'
miRNA:   3'- cGCuGcCGGGCGU-GGGGCaGCUCGUC- -5'
21406 3' -62.4 NC_004812.1 + 55706 0.66 0.62947
Target:  5'- cGCGGCcGUcuCCGCGCCCCGccUCGGGgGc -3'
miRNA:   3'- -CGCUGcCG--GGCGUGGGGC--AGCUCgUc -5'
21406 3' -62.4 NC_004812.1 + 23017 0.66 0.62947
Target:  5'- cGCGAcaaCGGCgCGCuACCgCCGcCG-GCAGg -3'
miRNA:   3'- -CGCU---GCCGgGCG-UGG-GGCaGCuCGUC- -5'
21406 3' -62.4 NC_004812.1 + 130280 0.66 0.639164
Target:  5'- gGCcACGGCUCGCcgcuggcguaCCCGUCGcgguAGCGGg -3'
miRNA:   3'- -CGcUGCCGGGCGug--------GGGCAGC----UCGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.