miRNA display CGI


Results 1 - 20 of 610 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21406 3' -62.4 NC_004812.1 + 117070 1.09 0.00092
Target:  5'- cGCGACGGCCCGCACCCCGUCGAGCAGc -3'
miRNA:   3'- -CGCUGCCGGGCGUGGGGCAGCUCGUC- -5'
21406 3' -62.4 NC_004812.1 + 30891 0.83 0.06872
Target:  5'- aGCGcGCGGcCCCGCGCCCCG-CGGGCAc -3'
miRNA:   3'- -CGC-UGCC-GGGCGUGGGGCaGCUCGUc -5'
21406 3' -62.4 NC_004812.1 + 6017 0.82 0.078011
Target:  5'- cGCGGCGGCgC-CGCCCCGUCGAGgAGc -3'
miRNA:   3'- -CGCUGCCGgGcGUGGGGCAGCUCgUC- -5'
21406 3' -62.4 NC_004812.1 + 131526 0.82 0.078011
Target:  5'- cGCGGCGGCgC-CGCCCCGUCGAGgAGc -3'
miRNA:   3'- -CGCUGCCGgGcGUGGGGCAGCUCgUC- -5'
21406 3' -62.4 NC_004812.1 + 19907 0.8 0.097837
Target:  5'- cGCGGCGGCCCGCGCCgCCGccaccgCGccGGCGGc -3'
miRNA:   3'- -CGCUGCCGGGCGUGG-GGCa-----GC--UCGUC- -5'
21406 3' -62.4 NC_004812.1 + 138262 0.8 0.100314
Target:  5'- cGCGGCGGCCgcggucgcgcgcCGCGCCCUG-CGGGCGGu -3'
miRNA:   3'- -CGCUGCCGG------------GCGUGGGGCaGCUCGUC- -5'
21406 3' -62.4 NC_004812.1 + 95535 0.8 0.105446
Target:  5'- cGgGGCGGCCCggggcgucGCGCCCCGgcggggUCGAGCGGg -3'
miRNA:   3'- -CgCUGCCGGG--------CGUGGGGC------AGCUCGUC- -5'
21406 3' -62.4 NC_004812.1 + 80333 0.79 0.119375
Target:  5'- -aGGCGGCCgCGCGCgCCGUCGAgGCGGc -3'
miRNA:   3'- cgCUGCCGG-GCGUGgGGCAGCU-CGUC- -5'
21406 3' -62.4 NC_004812.1 + 19700 0.78 0.131731
Target:  5'- cGCGGCGGCgCGCggcGCCggcgaccggCCGUCGGGCAGa -3'
miRNA:   3'- -CGCUGCCGgGCG---UGG---------GGCAGCUCGUC- -5'
21406 3' -62.4 NC_004812.1 + 54608 0.78 0.135
Target:  5'- cGCGGCGGCgCCGCGagucgcgcgaccCCCCGcgCGGGCGGc -3'
miRNA:   3'- -CGCUGCCG-GGCGU------------GGGGCa-GCUCGUC- -5'
21406 3' -62.4 NC_004812.1 + 115499 0.78 0.141762
Target:  5'- gGCGGCGGCCCGgccuCACCUCGaggaaCGGGCGGg -3'
miRNA:   3'- -CGCUGCCGGGC----GUGGGGCa----GCUCGUC- -5'
21406 3' -62.4 NC_004812.1 + 95758 0.78 0.145258
Target:  5'- cGCGGCGGCCgCGCACaccgagCCCGUgGAGcCGGg -3'
miRNA:   3'- -CGCUGCCGG-GCGUG------GGGCAgCUC-GUC- -5'
21406 3' -62.4 NC_004812.1 + 108568 0.78 0.145258
Target:  5'- cGCuGGUGGCgCGCGCCCCGcUCGGGCAGc -3'
miRNA:   3'- -CG-CUGCCGgGCGUGGGGC-AGCUCGUC- -5'
21406 3' -62.4 NC_004812.1 + 5955 0.78 0.148833
Target:  5'- cCGGCGGCUC-CGCCCCGUCGAGgAu -3'
miRNA:   3'- cGCUGCCGGGcGUGGGGCAGCUCgUc -5'
21406 3' -62.4 NC_004812.1 + 131463 0.78 0.148833
Target:  5'- cCGGCGGCUC-CGCCCCGUCGAGgAu -3'
miRNA:   3'- cGCUGCCGGGcGUGGGGCAGCUCgUc -5'
21406 3' -62.4 NC_004812.1 + 35034 0.77 0.160042
Target:  5'- ---uCGGCCCcCGCCCCGcCGAGCAGg -3'
miRNA:   3'- cgcuGCCGGGcGUGGGGCaGCUCGUC- -5'
21406 3' -62.4 NC_004812.1 + 4133 0.77 0.160042
Target:  5'- ---uCGGCCCcCGCCCCGcCGAGCAGg -3'
miRNA:   3'- cgcuGCCGGGcGUGGGGCaGCUCGUC- -5'
21406 3' -62.4 NC_004812.1 + 151952 0.77 0.167529
Target:  5'- cGCGACGGCCgGCGagccccuCCCCGcgCGGGCGu -3'
miRNA:   3'- -CGCUGCCGGgCGU-------GGGGCa-GCUCGUc -5'
21406 3' -62.4 NC_004812.1 + 121051 0.77 0.167529
Target:  5'- cGCGACGGCCgGCGagccccuCCCCGcgCGGGCGu -3'
miRNA:   3'- -CGCUGCCGGgCGU-------GGGGCa-GCUCGUc -5'
21406 3' -62.4 NC_004812.1 + 84093 0.77 0.167932
Target:  5'- gGCGcCGGCCCGgACCCCGgCG-GCGGc -3'
miRNA:   3'- -CGCuGCCGGGCgUGGGGCaGCuCGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.