miRNA display CGI


Results 1 - 20 of 610 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21406 3' -62.4 NC_004812.1 + 151357 0.74 0.261038
Target:  5'- cGCGGCGGCCgacucggCGCGCCCCGaCGGccGCGa -3'
miRNA:   3'- -CGCUGCCGG-------GCGUGGGGCaGCU--CGUc -5'
21406 3' -62.4 NC_004812.1 + 142063 0.76 0.180421
Target:  5'- gGCGACGaGCCCGC-CCCCG-CGGucGCGGc -3'
miRNA:   3'- -CGCUGC-CGGGCGuGGGGCaGCU--CGUC- -5'
21406 3' -62.4 NC_004812.1 + 56282 0.76 0.184764
Target:  5'- cGCGGCGGCCCGCucgaggGCCUgGUCcAGCAc -3'
miRNA:   3'- -CGCUGCCGGGCG------UGGGgCAGcUCGUc -5'
21406 3' -62.4 NC_004812.1 + 77876 0.75 0.222923
Target:  5'- gGCGGCGGCCCGgACCUccucgCGcCGGGCGa -3'
miRNA:   3'- -CGCUGCCGGGCgUGGG-----GCaGCUCGUc -5'
21406 3' -62.4 NC_004812.1 + 1383 0.75 0.233458
Target:  5'- cGCGACGGCCCGC-CCCgCGcCGcGCc- -3'
miRNA:   3'- -CGCUGCCGGGCGuGGG-GCaGCuCGuc -5'
21406 3' -62.4 NC_004812.1 + 16721 0.75 0.233458
Target:  5'- cGCGGggcCGGuCCCGCuCgCCCGUCGAcGCAGg -3'
miRNA:   3'- -CGCU---GCC-GGGCGuG-GGGCAGCU-CGUC- -5'
21406 3' -62.4 NC_004812.1 + 105155 0.74 0.23888
Target:  5'- aGUGGUGGCCguaGCGCCCCGccugCGAGCGGc -3'
miRNA:   3'- -CGCUGCCGGg--CGUGGGGCa---GCUCGUC- -5'
21406 3' -62.4 NC_004812.1 + 76838 0.74 0.244407
Target:  5'- gGgGGCGcGCCUGCGCggCGUCGGGCAGg -3'
miRNA:   3'- -CgCUGC-CGGGCGUGggGCAGCUCGUC- -5'
21406 3' -62.4 NC_004812.1 + 102902 0.74 0.244407
Target:  5'- gGCGGCGGaCCgGCGCCUCGgggGGGCGGc -3'
miRNA:   3'- -CGCUGCC-GGgCGUGGGGCag-CUCGUC- -5'
21406 3' -62.4 NC_004812.1 + 112791 0.76 0.176169
Target:  5'- cGCGGCGGCUC---CCCCGUCGGGCGu -3'
miRNA:   3'- -CGCUGCCGGGcguGGGGCAGCUCGUc -5'
21406 3' -62.4 NC_004812.1 + 121051 0.77 0.167529
Target:  5'- cGCGACGGCCgGCGagccccuCCCCGcgCGGGCGu -3'
miRNA:   3'- -CGCUGCCGGgCGU-------GGGGCa-GCUCGUc -5'
21406 3' -62.4 NC_004812.1 + 4133 0.77 0.160042
Target:  5'- ---uCGGCCCcCGCCCCGcCGAGCAGg -3'
miRNA:   3'- cgcuGCCGGGcGUGGGGCaGCUCGUC- -5'
21406 3' -62.4 NC_004812.1 + 131526 0.82 0.078011
Target:  5'- cGCGGCGGCgC-CGCCCCGUCGAGgAGc -3'
miRNA:   3'- -CGCUGCCGgGcGUGGGGCAGCUCgUC- -5'
21406 3' -62.4 NC_004812.1 + 19907 0.8 0.097837
Target:  5'- cGCGGCGGCCCGCGCCgCCGccaccgCGccGGCGGc -3'
miRNA:   3'- -CGCUGCCGGGCGUGG-GGCa-----GC--UCGUC- -5'
21406 3' -62.4 NC_004812.1 + 95535 0.8 0.105446
Target:  5'- cGgGGCGGCCCggggcgucGCGCCCCGgcggggUCGAGCGGg -3'
miRNA:   3'- -CgCUGCCGGG--------CGUGGGGC------AGCUCGUC- -5'
21406 3' -62.4 NC_004812.1 + 19700 0.78 0.131731
Target:  5'- cGCGGCGGCgCGCggcGCCggcgaccggCCGUCGGGCAGa -3'
miRNA:   3'- -CGCUGCCGgGCG---UGG---------GGCAGCUCGUC- -5'
21406 3' -62.4 NC_004812.1 + 115499 0.78 0.141762
Target:  5'- gGCGGCGGCCCGgccuCACCUCGaggaaCGGGCGGg -3'
miRNA:   3'- -CGCUGCCGGGC----GUGGGGCa----GCUCGUC- -5'
21406 3' -62.4 NC_004812.1 + 95758 0.78 0.145258
Target:  5'- cGCGGCGGCCgCGCACaccgagCCCGUgGAGcCGGg -3'
miRNA:   3'- -CGCUGCCGG-GCGUG------GGGCAgCUC-GUC- -5'
21406 3' -62.4 NC_004812.1 + 108568 0.78 0.145258
Target:  5'- cGCuGGUGGCgCGCGCCCCGcUCGGGCAGc -3'
miRNA:   3'- -CG-CUGCCGgGCGUGGGGC-AGCUCGUC- -5'
21406 3' -62.4 NC_004812.1 + 131463 0.78 0.148833
Target:  5'- cCGGCGGCUC-CGCCCCGUCGAGgAu -3'
miRNA:   3'- cGCUGCCGGGcGUGGGGCAGCUCgUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.