miRNA display CGI


Results 1 - 20 of 610 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21406 3' -62.4 NC_004812.1 + 113 0.68 0.562021
Target:  5'- cGCGcccCGGCCCGUcCCUCG-CGAGUg- -3'
miRNA:   3'- -CGCu--GCCGGGCGuGGGGCaGCUCGuc -5'
21406 3' -62.4 NC_004812.1 + 392 0.7 0.443518
Target:  5'- cGCGGCGcCCCGCcCCCCacgCGcGCAGg -3'
miRNA:   3'- -CGCUGCcGGGCGuGGGGca-GCuCGUC- -5'
21406 3' -62.4 NC_004812.1 + 463 0.68 0.515031
Target:  5'- cGCG-CGuCCCGCGCCCCG-CGuccgcGCGGc -3'
miRNA:   3'- -CGCuGCcGGGCGUGGGGCaGCu----CGUC- -5'
21406 3' -62.4 NC_004812.1 + 553 0.66 0.639164
Target:  5'- gGCGACGcGCCgCGCGacgcccgCCCGUCccGCGGc -3'
miRNA:   3'- -CGCUGC-CGG-GCGUg------GGGCAGcuCGUC- -5'
21406 3' -62.4 NC_004812.1 + 1217 0.7 0.401762
Target:  5'- gGgGGCGGCgCCGCGggggcuccuCCCCGccCGGGCGGc -3'
miRNA:   3'- -CgCUGCCG-GGCGU---------GGGGCa-GCUCGUC- -5'
21406 3' -62.4 NC_004812.1 + 1258 0.71 0.370211
Target:  5'- cGCGGCcGCCCGUugguCCgCCGgccgCGGGCGGg -3'
miRNA:   3'- -CGCUGcCGGGCGu---GG-GGCa---GCUCGUC- -5'
21406 3' -62.4 NC_004812.1 + 1320 0.67 0.581159
Target:  5'- cGCgGGCGGUCCGCggGCggUCCG-CGGGCGGu -3'
miRNA:   3'- -CG-CUGCCGGGCG--UG--GGGCaGCUCGUC- -5'
21406 3' -62.4 NC_004812.1 + 1383 0.75 0.233458
Target:  5'- cGCGACGGCCCGC-CCCgCGcCGcGCc- -3'
miRNA:   3'- -CGCUGCCGGGCGuGGG-GCaGCuCGuc -5'
21406 3' -62.4 NC_004812.1 + 1407 0.67 0.581159
Target:  5'- --cGCGGCCCG-GCCCCGaCG-GCGGc -3'
miRNA:   3'- cgcUGCCGGGCgUGGGGCaGCuCGUC- -5'
21406 3' -62.4 NC_004812.1 + 1465 0.69 0.469713
Target:  5'- gGCGGCGacGCCgGCGuCCUCGgCGGGCGGc -3'
miRNA:   3'- -CGCUGC--CGGgCGU-GGGGCaGCUCGUC- -5'
21406 3' -62.4 NC_004812.1 + 1505 0.72 0.340395
Target:  5'- cCGGcCGGCCCGCGCCgCCGcgCGAGgGc -3'
miRNA:   3'- cGCU-GCCGGGCGUGG-GGCa-GCUCgUc -5'
21406 3' -62.4 NC_004812.1 + 1671 0.68 0.552516
Target:  5'- gGCcGCGGCgCCGCGgCCCGccCGcGGCGGg -3'
miRNA:   3'- -CGcUGCCG-GGCGUgGGGCa-GC-UCGUC- -5'
21406 3' -62.4 NC_004812.1 + 1748 0.73 0.305628
Target:  5'- cGCGGCccgaGCCCGCGCCCCcUCGcAGCc- -3'
miRNA:   3'- -CGCUGc---CGGGCGUGGGGcAGC-UCGuc -5'
21406 3' -62.4 NC_004812.1 + 2219 0.66 0.668187
Target:  5'- cGCcGCGGCCCGCGgCCCagcgcaCGcGCGGc -3'
miRNA:   3'- -CGcUGCCGGGCGUgGGGca----GCuCGUC- -5'
21406 3' -62.4 NC_004812.1 + 2490 0.69 0.493947
Target:  5'- gGCGGCGGCCuCGCgggcgggcgagucgGCggcgcggCCGUCGAGCGc -3'
miRNA:   3'- -CGCUGCCGG-GCG--------------UGg------GGCAGCUCGUc -5'
21406 3' -62.4 NC_004812.1 + 2623 0.72 0.326153
Target:  5'- cGCGcCGGCCC-CGCCCCG-CGAGa-- -3'
miRNA:   3'- -CGCuGCCGGGcGUGGGGCaGCUCguc -5'
21406 3' -62.4 NC_004812.1 + 2751 0.67 0.581159
Target:  5'- cGCGGCgGGCCagcggacguCGCACUgCGcggCGGGCAGc -3'
miRNA:   3'- -CGCUG-CCGG---------GCGUGGgGCa--GCUCGUC- -5'
21406 3' -62.4 NC_004812.1 + 2810 0.67 0.600427
Target:  5'- cGUGGCGGCgCGCGacggcgggCCCGUCGGcCGGc -3'
miRNA:   3'- -CGCUGCCGgGCGUg-------GGGCAGCUcGUC- -5'
21406 3' -62.4 NC_004812.1 + 2879 0.72 0.326153
Target:  5'- gGCGGCGGCCgGCGgCggCGgCGAGCAGg -3'
miRNA:   3'- -CGCUGCCGGgCGUgGg-GCaGCUCGUC- -5'
21406 3' -62.4 NC_004812.1 + 2928 0.66 0.677819
Target:  5'- gGCGAaGGCCaGguCCCgCGUggaGAGCAGg -3'
miRNA:   3'- -CGCUgCCGGgCguGGG-GCAg--CUCGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.