miRNA display CGI


Results 1 - 20 of 480 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21407 5' -59.1 NC_004812.1 + 58763 0.65 0.843849
Target:  5'- gCCGGcGGCGCCcggcgAGcGAGGGcGcggugggcuuuccGGGCCCCGg -3'
miRNA:   3'- -GGCC-CUGCGG-----UC-UUCCC-C-------------UUUGGGGC- -5'
21407 5' -59.1 NC_004812.1 + 59760 0.65 0.842292
Target:  5'- cCCGGGguccccuuuuugugGgGCCGGuGGGGGcgGCgCCCu -3'
miRNA:   3'- -GGCCC--------------UgCGGUCuUCCCCuuUG-GGGc -5'
21407 5' -59.1 NC_004812.1 + 12377 0.65 0.843849
Target:  5'- cCCGGccgcGCgGCCGGGAGGGcGAagagccgAACCUCGu -3'
miRNA:   3'- -GGCCc---UG-CGGUCUUCCC-CU-------UUGGGGC- -5'
21407 5' -59.1 NC_004812.1 + 152688 0.65 0.843849
Target:  5'- gCGaGGGCGCUugggcccucgcguGGcGGGGGcgGCCUCGg -3'
miRNA:   3'- gGC-CCUGCGG-------------UCuUCCCCuuUGGGGC- -5'
21407 5' -59.1 NC_004812.1 + 115349 0.66 0.803785
Target:  5'- cUCGGGA-GCgCGGgcGGGGAcgcGGCgCCGa -3'
miRNA:   3'- -GGCCCUgCG-GUCuuCCCCU---UUGgGGC- -5'
21407 5' -59.1 NC_004812.1 + 149540 0.66 0.81227
Target:  5'- aCGGGGugauccgucguUGCUAGGcgacGGGGGAcgccGCCCCu -3'
miRNA:   3'- gGCCCU-----------GCGGUCU----UCCCCUu---UGGGGc -5'
21407 5' -59.1 NC_004812.1 + 149022 0.66 0.815622
Target:  5'- gCGGcGGCGCCGGcuuuaugccggcgguGGGGGcGGGACCgCCc -3'
miRNA:   3'- gGCC-CUGCGGUC---------------UUCCC-CUUUGG-GGc -5'
21407 5' -59.1 NC_004812.1 + 107855 0.66 0.81227
Target:  5'- gCGGGGCuccGCCuccGAGGGcGGAGCCgCCa -3'
miRNA:   3'- gGCCCUG---CGGuc-UUCCC-CUUUGG-GGc -5'
21407 5' -59.1 NC_004812.1 + 51123 0.66 0.808894
Target:  5'- aCCGGGacgacGCGCCcuacuaccccGGGGAGgcgcgcGCCCCGc -3'
miRNA:   3'- -GGCCC-----UGCGGucuu------CCCCUU------UGGGGC- -5'
21407 5' -59.1 NC_004812.1 + 71203 0.66 0.81227
Target:  5'- gCGGGccGCGCCAGGcggcgAGcGGGcgGCCgCGa -3'
miRNA:   3'- gGCCC--UGCGGUCU-----UC-CCCuuUGGgGC- -5'
21407 5' -59.1 NC_004812.1 + 38171 0.66 0.81227
Target:  5'- gCCGGGGCcCgCGGGAGGG---ACCCgCGg -3'
miRNA:   3'- -GGCCCUGcG-GUCUUCCCcuuUGGG-GC- -5'
21407 5' -59.1 NC_004812.1 + 59600 0.66 0.80464
Target:  5'- -gGGGGCGCgGGcggcgcucgcgaaccGGGGGuggcGGCCCCGc -3'
miRNA:   3'- ggCCCUGCGgUCu--------------UCCCCu---UUGGGGC- -5'
21407 5' -59.1 NC_004812.1 + 838 0.66 0.803785
Target:  5'- uCCgGGGugGCCGGggGuccuGGGG--UCCUGg -3'
miRNA:   3'- -GG-CCCugCGGUCuuC----CCCUuuGGGGC- -5'
21407 5' -59.1 NC_004812.1 + 31738 0.66 0.81227
Target:  5'- gCCGaGaGGCGCgGGgcGGGGGcgcGGCgCCCGc -3'
miRNA:   3'- -GGC-C-CUGCGgUCuuCCCCU---UUG-GGGC- -5'
21407 5' -59.1 NC_004812.1 + 98754 0.66 0.820604
Target:  5'- cCCGGcGGCGacgaCAGGAGGcgcagcGAGGCCUCGu -3'
miRNA:   3'- -GGCC-CUGCg---GUCUUCCc-----CUUUGGGGC- -5'
21407 5' -59.1 NC_004812.1 + 5513 0.66 0.815622
Target:  5'- gCCGGG-CGCCgcgcagcagggacacGGcGGGccGGggGCCCCc -3'
miRNA:   3'- -GGCCCuGCGG---------------UCuUCC--CCuuUGGGGc -5'
21407 5' -59.1 NC_004812.1 + 120490 0.66 0.801211
Target:  5'- cCCGGGAgccccCGCCccucucugcuucuGGGGAGcCCCCGc -3'
miRNA:   3'- -GGCCCU-----GCGGucuu---------CCCCUUuGGGGC- -5'
21407 5' -59.1 NC_004812.1 + 134261 0.66 0.811428
Target:  5'- gCUGGGGuCGUCuuccccgAGucuAGGGGAAccagguccaGCCCCGg -3'
miRNA:   3'- -GGCCCU-GCGG-------UCu--UCCCCUU---------UGGGGC- -5'
21407 5' -59.1 NC_004812.1 + 8236 0.66 0.803785
Target:  5'- cCCGGcg-GCCGGGccGGGGGuccgcCCCCGg -3'
miRNA:   3'- -GGCCcugCGGUCU--UCCCCuuu--GGGGC- -5'
21407 5' -59.1 NC_004812.1 + 126930 0.66 0.81227
Target:  5'- aCGGcGGcCGCgGGGAGGGGccgGGGCCgCGa -3'
miRNA:   3'- gGCC-CU-GCGgUCUUCCCC---UUUGGgGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.