Results 1 - 20 of 480 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
21407 | 5' | -59.1 | NC_004812.1 | + | 115677 | 1.1 | 0.001712 |
Target: 5'- cCCGGGACGCCAGAAGGGGAAACCCCGu -3' miRNA: 3'- -GGCCCUGCGGUCUUCCCCUUUGGGGC- -5' |
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21407 | 5' | -59.1 | NC_004812.1 | + | 106787 | 0.84 | 0.092478 |
Target: 5'- gCGGGGCGCgCGGGAGGGGGccucgcgccgacugGGCCCCGc -3' miRNA: 3'- gGCCCUGCG-GUCUUCCCCU--------------UUGGGGC- -5' |
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21407 | 5' | -59.1 | NC_004812.1 | + | 13571 | 0.82 | 0.120028 |
Target: 5'- -gGGGGCGCCGGAgcgaguuuccccGGGGGGAACUCCa -3' miRNA: 3'- ggCCCUGCGGUCU------------UCCCCUUUGGGGc -5' |
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21407 | 5' | -59.1 | NC_004812.1 | + | 98507 | 0.81 | 0.146508 |
Target: 5'- gCGGGGCGCCGGGucccGGGcgGCCCCGg -3' miRNA: 3'- gGCCCUGCGGUCUuc--CCCuuUGGGGC- -5' |
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21407 | 5' | -59.1 | NC_004812.1 | + | 49621 | 0.81 | 0.153916 |
Target: 5'- -aGGGGCGCCcgcggggcgGGAGGGGGAGgcGCCCCu -3' miRNA: 3'- ggCCCUGCGG---------UCUUCCCCUU--UGGGGc -5' |
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21407 | 5' | -59.1 | NC_004812.1 | + | 29504 | 0.8 | 0.175639 |
Target: 5'- gCGGGGCGcCCGGAggcggggagccgugcGGGGGGGACCCgGg -3' miRNA: 3'- gGCCCUGC-GGUCU---------------UCCCCUUUGGGgC- -5' |
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21407 | 5' | -59.1 | NC_004812.1 | + | 155012 | 0.8 | 0.175639 |
Target: 5'- gCGGGGCGcCCGGAggcggggagccgugcGGGGGGGACCCgGg -3' miRNA: 3'- gGCCCUGC-GGUCU---------------UCCCCUUUGGGgC- -5' |
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21407 | 5' | -59.1 | NC_004812.1 | + | 155515 | 0.8 | 0.182581 |
Target: 5'- cCCGGGcCGCCGGGcAGGaGGAGACCgCGg -3' miRNA: 3'- -GGCCCuGCGGUCU-UCC-CCUUUGGgGC- -5' |
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21407 | 5' | -59.1 | NC_004812.1 | + | 124614 | 0.8 | 0.182581 |
Target: 5'- cCCGGGcCGCCGGGcAGGaGGAGACCgCGg -3' miRNA: 3'- -GGCCCuGCGGUCU-UCC-CCUUUGGgGC- -5' |
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21407 | 5' | -59.1 | NC_004812.1 | + | 85132 | 0.79 | 0.196253 |
Target: 5'- aCCGGGGCGCgCGGgcGGGGgcGCgCCUGg -3' miRNA: 3'- -GGCCCUGCG-GUCuuCCCCuuUG-GGGC- -5' |
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21407 | 5' | -59.1 | NC_004812.1 | + | 7987 | 0.79 | 0.201006 |
Target: 5'- gCGcGGGCGCCGGucAGGGGGGcgcucccgcGACCCCGg -3' miRNA: 3'- gGC-CCUGCGGUC--UUCCCCU---------UUGGGGC- -5' |
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21407 | 5' | -59.1 | NC_004812.1 | + | 27899 | 0.79 | 0.205368 |
Target: 5'- cCCGGGGCGagcCCGGucGGGGAGaccgggcGCCCCGc -3' miRNA: 3'- -GGCCCUGC---GGUCuuCCCCUU-------UGGGGC- -5' |
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21407 | 5' | -59.1 | NC_004812.1 | + | 61385 | 0.79 | 0.205858 |
Target: 5'- gCGGGGCGgCGGGGuGaGGGAAACCCCa -3' miRNA: 3'- gGCCCUGCgGUCUU-C-CCCUUUGGGGc -5' |
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21407 | 5' | -59.1 | NC_004812.1 | + | 44421 | 0.79 | 0.210811 |
Target: 5'- cCCGGGGCGCCGGgcGGG--AACCCgCGu -3' miRNA: 3'- -GGCCCUGCGGUCuuCCCcuUUGGG-GC- -5' |
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21407 | 5' | -59.1 | NC_004812.1 | + | 98441 | 0.78 | 0.221026 |
Target: 5'- gCGGGGCGgCAGGcgcGGGGgcGCCCCGu -3' miRNA: 3'- gGCCCUGCgGUCUu--CCCCuuUGGGGC- -5' |
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21407 | 5' | -59.1 | NC_004812.1 | + | 67783 | 0.78 | 0.23166 |
Target: 5'- cCCGGGGCGCgggcggcuuCGGggGGGGcgGgCCCGg -3' miRNA: 3'- -GGCCCUGCG---------GUCuuCCCCuuUgGGGC- -5' |
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21407 | 5' | -59.1 | NC_004812.1 | + | 105800 | 0.78 | 0.237137 |
Target: 5'- gCCGGGGgGCUuGggGGuGGggGCUCCGg -3' miRNA: 3'- -GGCCCUgCGGuCuuCC-CCuuUGGGGC- -5' |
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21407 | 5' | -59.1 | NC_004812.1 | + | 18377 | 0.78 | 0.242721 |
Target: 5'- aCGcGGGC-CCGcGGAGGGGAAACCCCu -3' miRNA: 3'- gGC-CCUGcGGU-CUUCCCCUUUGGGGc -5' |
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21407 | 5' | -59.1 | NC_004812.1 | + | 31105 | 0.77 | 0.248415 |
Target: 5'- cCCGGaaACGCgGGGAGGGGggGCCCa- -3' miRNA: 3'- -GGCCc-UGCGgUCUUCCCCuuUGGGgc -5' |
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21407 | 5' | -59.1 | NC_004812.1 | + | 204 | 0.77 | 0.248415 |
Target: 5'- cCCGGaaACGCgGGGAGGGGggGCCCa- -3' miRNA: 3'- -GGCCc-UGCGgUCUUCCCCuuUGGGgc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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