miRNA display CGI


Results 1 - 20 of 480 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21407 5' -59.1 NC_004812.1 + 8470 0.75 0.347387
Target:  5'- cCCGGGuACGCCAGAGGuGGAGAUCgagcggCCGg -3'
miRNA:   3'- -GGCCC-UGCGGUCUUCcCCUUUGG------GGC- -5'
21407 5' -59.1 NC_004812.1 + 56512 0.76 0.291397
Target:  5'- aCGGGuCGCUAaucucGggGGGGAcgacgAGCCCCGa -3'
miRNA:   3'- gGCCCuGCGGU-----CuuCCCCU-----UUGGGGC- -5'
21407 5' -59.1 NC_004812.1 + 67257 0.76 0.291397
Target:  5'- aCGGu-CGCCAGGAGGGGcccGAGCUCCGc -3'
miRNA:   3'- gGCCcuGCGGUCUUCCCC---UUUGGGGC- -5'
21407 5' -59.1 NC_004812.1 + 102382 0.76 0.297992
Target:  5'- --aGGACGCCGGAGGGGGGcacgacggaAGCgCCCGc -3'
miRNA:   3'- ggcCCUGCGGUCUUCCCCU---------UUG-GGGC- -5'
21407 5' -59.1 NC_004812.1 + 101883 0.75 0.325526
Target:  5'- cCCGGGggcGCGCCGGGcuAGGGc--GCCCCGa -3'
miRNA:   3'- -GGCCC---UGCGGUCU--UCCCcuuUGGGGC- -5'
21407 5' -59.1 NC_004812.1 + 985 0.75 0.332698
Target:  5'- uCCGGGGuCGCCGGGGuccuggggguccGGGGucGCCCCc -3'
miRNA:   3'- -GGCCCU-GCGGUCUU------------CCCCuuUGGGGc -5'
21407 5' -59.1 NC_004812.1 + 127984 0.75 0.339985
Target:  5'- uCCGGGGCGCCGGc-GGcGGcgGCCUCGc -3'
miRNA:   3'- -GGCCCUGCGGUCuuCC-CCuuUGGGGC- -5'
21407 5' -59.1 NC_004812.1 + 8381 0.75 0.342932
Target:  5'- gCCGGGGC-CCGGGguccgggggcgcggcGGGGGcucGGCCCCGg -3'
miRNA:   3'- -GGCCCUGcGGUCU---------------UCCCCu--UUGGGGC- -5'
21407 5' -59.1 NC_004812.1 + 4617 0.75 0.347387
Target:  5'- cUCGGGugGCCcuuaggggcGGggGGGcGGGACgCCCGc -3'
miRNA:   3'- -GGCCCugCGG---------UCuuCCC-CUUUG-GGGC- -5'
21407 5' -59.1 NC_004812.1 + 5646 0.76 0.291397
Target:  5'- cCCGGGGuCGCCGGGcgcgAGGGG-AGCCCg- -3'
miRNA:   3'- -GGCCCU-GCGGUCU----UCCCCuUUGGGgc -5'
21407 5' -59.1 NC_004812.1 + 204 0.77 0.248415
Target:  5'- cCCGGaaACGCgGGGAGGGGggGCCCa- -3'
miRNA:   3'- -GGCCc-UGCGgUCUUCCCCuuUGGGgc -5'
21407 5' -59.1 NC_004812.1 + 18377 0.78 0.242721
Target:  5'- aCGcGGGC-CCGcGGAGGGGAAACCCCu -3'
miRNA:   3'- gGC-CCUGcGGU-CUUCCCCUUUGGGGc -5'
21407 5' -59.1 NC_004812.1 + 155012 0.8 0.175639
Target:  5'- gCGGGGCGcCCGGAggcggggagccgugcGGGGGGGACCCgGg -3'
miRNA:   3'- gGCCCUGC-GGUCU---------------UCCCCUUUGGGgC- -5'
21407 5' -59.1 NC_004812.1 + 124614 0.8 0.182581
Target:  5'- cCCGGGcCGCCGGGcAGGaGGAGACCgCGg -3'
miRNA:   3'- -GGCCCuGCGGUCU-UCC-CCUUUGGgGC- -5'
21407 5' -59.1 NC_004812.1 + 85132 0.79 0.196253
Target:  5'- aCCGGGGCGCgCGGgcGGGGgcGCgCCUGg -3'
miRNA:   3'- -GGCCCUGCG-GUCuuCCCCuuUG-GGGC- -5'
21407 5' -59.1 NC_004812.1 + 7987 0.79 0.201006
Target:  5'- gCGcGGGCGCCGGucAGGGGGGcgcucccgcGACCCCGg -3'
miRNA:   3'- gGC-CCUGCGGUC--UUCCCCU---------UUGGGGC- -5'
21407 5' -59.1 NC_004812.1 + 27899 0.79 0.205368
Target:  5'- cCCGGGGCGagcCCGGucGGGGAGaccgggcGCCCCGc -3'
miRNA:   3'- -GGCCCUGC---GGUCuuCCCCUU-------UGGGGC- -5'
21407 5' -59.1 NC_004812.1 + 61385 0.79 0.205858
Target:  5'- gCGGGGCGgCGGGGuGaGGGAAACCCCa -3'
miRNA:   3'- gGCCCUGCgGUCUU-C-CCCUUUGGGGc -5'
21407 5' -59.1 NC_004812.1 + 98441 0.78 0.221026
Target:  5'- gCGGGGCGgCAGGcgcGGGGgcGCCCCGu -3'
miRNA:   3'- gGCCCUGCgGUCUu--CCCCuuUGGGGC- -5'
21407 5' -59.1 NC_004812.1 + 67783 0.78 0.23166
Target:  5'- cCCGGGGCGCgggcggcuuCGGggGGGGcgGgCCCGg -3'
miRNA:   3'- -GGCCCUGCG---------GUCuuCCCCuuUgGGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.