miRNA display CGI


Results 1 - 20 of 480 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21407 5' -59.1 NC_004812.1 + 101 0.71 0.555872
Target:  5'- gCCGGGGCGCgCGcGGGGccGGGAGCCCg- -3'
miRNA:   3'- -GGCCCUGCG-GUcUUCC--CCUUUGGGgc -5'
21407 5' -59.1 NC_004812.1 + 193 0.67 0.76848
Target:  5'- gCGcGcGCGCCGccGGGGGAGGgCCCGg -3'
miRNA:   3'- gGC-CcUGCGGUcuUCCCCUUUgGGGC- -5'
21407 5' -59.1 NC_004812.1 + 204 0.77 0.248415
Target:  5'- cCCGGaaACGCgGGGAGGGGggGCCCa- -3'
miRNA:   3'- -GGCCc-UGCGgUCUUCCCCuuUGGGgc -5'
21407 5' -59.1 NC_004812.1 + 239 0.67 0.794285
Target:  5'- gCGGGgcccaaggcucccGCGCgggaGGAGGGGGggGucUCCCGc -3'
miRNA:   3'- gGCCC-------------UGCGg---UCUUCCCCuuU--GGGGC- -5'
21407 5' -59.1 NC_004812.1 + 536 0.71 0.517697
Target:  5'- cCCGGGA-GCCGGAAGGcGGcGACgCgCCGc -3'
miRNA:   3'- -GGCCCUgCGGUCUUCC-CCuUUG-G-GGC- -5'
21407 5' -59.1 NC_004812.1 + 671 0.72 0.499001
Target:  5'- cCCGGG-CGgCGcGAGGGGAGcgcguCCCCGg -3'
miRNA:   3'- -GGCCCuGCgGUcUUCCCCUUu----GGGGC- -5'
21407 5' -59.1 NC_004812.1 + 838 0.66 0.803785
Target:  5'- uCCgGGGugGCCGGggGuccuGGGG--UCCUGg -3'
miRNA:   3'- -GG-CCCugCGGUCuuC----CCCUuuGGGGC- -5'
21407 5' -59.1 NC_004812.1 + 881 0.69 0.653866
Target:  5'- uCCGGGGuCGCCGGggGuccuGGGggUCCgGg -3'
miRNA:   3'- -GGCCCU-GCGGUCuuCc---CCUuuGGGgC- -5'
21407 5' -59.1 NC_004812.1 + 933 0.69 0.653866
Target:  5'- uCCGGGGuCGCCGGggGuccuGGGggUCCgGg -3'
miRNA:   3'- -GGCCCU-GCGGUCuuCc---CCUuuGGGgC- -5'
21407 5' -59.1 NC_004812.1 + 985 0.75 0.332698
Target:  5'- uCCGGGGuCGCCGGGGuccuggggguccGGGGucGCCCCc -3'
miRNA:   3'- -GGCCCU-GCGGUCUU------------CCCCuuUGGGGc -5'
21407 5' -59.1 NC_004812.1 + 1214 0.68 0.692998
Target:  5'- gCCGGGggcgGCGCCGc-GGGGGcuccuCCCCGc -3'
miRNA:   3'- -GGCCC----UGCGGUcuUCCCCuuu--GGGGC- -5'
21407 5' -59.1 NC_004812.1 + 1289 0.66 0.836788
Target:  5'- cCCaGGGuCcCCGGAGGcGGGGcgccGACCCCc -3'
miRNA:   3'- -GG-CCCuGcGGUCUUC-CCCU----UUGGGGc -5'
21407 5' -59.1 NC_004812.1 + 1422 0.66 0.81227
Target:  5'- aCGGcGGcCGCgGGGAGGGGccgGGGCCgCGa -3'
miRNA:   3'- gGCC-CU-GCGgUCUUCCCC---UUUGGgGC- -5'
21407 5' -59.1 NC_004812.1 + 1672 0.68 0.731377
Target:  5'- gCCGcGGCGCCGcggcccgcccgcGgcGGGGGAugCCCu -3'
miRNA:   3'- -GGCcCUGCGGU------------CuuCCCCUUugGGGc -5'
21407 5' -59.1 NC_004812.1 + 1820 0.7 0.623334
Target:  5'- gUCGGGGcCGCCccgucggGGGAGGGGAcaugcugaugaGAgCCCGc -3'
miRNA:   3'- -GGCCCU-GCGG-------UCUUCCCCU-----------UUgGGGC- -5'
21407 5' -59.1 NC_004812.1 + 1966 0.74 0.383701
Target:  5'- gCCGGG-CGCCGGggGGaGGggGggagggguggcgggUCCCGc -3'
miRNA:   3'- -GGCCCuGCGGUCuuCC-CCuuU--------------GGGGC- -5'
21407 5' -59.1 NC_004812.1 + 2055 0.73 0.427561
Target:  5'- -gGGGGCGCgGgGGAGGGGGcgcGCCCCc -3'
miRNA:   3'- ggCCCUGCGgU-CUUCCCCUu--UGGGGc -5'
21407 5' -59.1 NC_004812.1 + 2107 0.74 0.373408
Target:  5'- cCCGGGccGCGCucccagucccaguccCAGuccGGGGAGGCCCCGc -3'
miRNA:   3'- -GGCCC--UGCG---------------GUCuu-CCCCUUUGGGGC- -5'
21407 5' -59.1 NC_004812.1 + 2169 0.7 0.621364
Target:  5'- cCCGGGACGCCcggcccgaacccauGGAGcccucucgcGGccuuGGAGCCCCGg -3'
miRNA:   3'- -GGCCCUGCGG--------------UCUU---------CCc---CUUUGGGGC- -5'
21407 5' -59.1 NC_004812.1 + 2476 0.75 0.339985
Target:  5'- uCCGGGGCGCCGGc-GGcGGcgGCCUCGc -3'
miRNA:   3'- -GGCCCUGCGGUCuuCC-CCuuUGGGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.