miRNA display CGI


Results 1 - 20 of 133 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21408 3' -50.3 NC_004812.1 + 80621 0.66 0.993726
Target:  5'- gUGGGgGGUcCgcgGUGGaGAGgGGCGGGGa -3'
miRNA:   3'- -ACCCgCCAaGa--UACC-CUUgUUGUUCU- -5'
21408 3' -50.3 NC_004812.1 + 130472 0.66 0.994917
Target:  5'- cGGGCGGccggCggcggcgaggcgGGGGGCGACGGGu -3'
miRNA:   3'- aCCCGCCaa--Gaua---------CCCUUGUUGUUCu -5'
21408 3' -50.3 NC_004812.1 + 6816 0.66 0.99664
Target:  5'- cGGGCgucuGGggCUGggugGGGGGCGGCGGc- -3'
miRNA:   3'- aCCCG----CCaaGAUa---CCCUUGUUGUUcu -5'
21408 3' -50.3 NC_004812.1 + 34446 0.66 0.994597
Target:  5'- gGGGUGGgauggUC-GUGGGAGgGGgAAGGg -3'
miRNA:   3'- aCCCGCCa----AGaUACCCUUgUUgUUCU- -5'
21408 3' -50.3 NC_004812.1 + 114937 0.66 0.992747
Target:  5'- gGGGgGGUUg---GGGAaaguggacgcgGCGGCAAGAa -3'
miRNA:   3'- aCCCgCCAAgauaCCCU-----------UGUUGUUCU- -5'
21408 3' -50.3 NC_004812.1 + 135129 0.66 0.992747
Target:  5'- gGGGUGGggUguuUGGGGAgGACGAa- -3'
miRNA:   3'- aCCCGCCaaGau-ACCCUUgUUGUUcu -5'
21408 3' -50.3 NC_004812.1 + 63590 0.66 0.995367
Target:  5'- gGGGUGuGUUCcgcgUGUGGGAcauCGGCcAGAg -3'
miRNA:   3'- aCCCGC-CAAG----AUACCCUu--GUUGuUCU- -5'
21408 3' -50.3 NC_004812.1 + 66044 0.66 0.996045
Target:  5'- gUGGGCcgaGGUUCcc-GGGAagACGACGuAGAg -3'
miRNA:   3'- -ACCCG---CCAAGauaCCCU--UGUUGU-UCU- -5'
21408 3' -50.3 NC_004812.1 + 121763 0.66 0.996045
Target:  5'- cGGGCcuccGGgaggc-GGGGGCAGCGAGGg -3'
miRNA:   3'- aCCCG----CCaagauaCCCUUGUUGUUCU- -5'
21408 3' -50.3 NC_004812.1 + 67792 0.66 0.993726
Target:  5'- cGGGCGGcUUCgggGGGGGCGGg---- -3'
miRNA:   3'- aCCCGCC-AAGauaCCCUUGUUguucu -5'
21408 3' -50.3 NC_004812.1 + 137978 0.66 0.993726
Target:  5'- gGGGCGGggUCgggGGGGGgGGgGGGGg -3'
miRNA:   3'- aCCCGCCa-AGauaCCCUUgUUgUUCU- -5'
21408 3' -50.3 NC_004812.1 + 5226 0.66 0.992747
Target:  5'- gGGGCGGgggCUcccGGGAGaagcACAAGAc -3'
miRNA:   3'- aCCCGCCaa-GAua-CCCUUgu--UGUUCU- -5'
21408 3' -50.3 NC_004812.1 + 60892 0.66 0.99664
Target:  5'- -aGGCGGaagUCggcgGUGGGGcGCGGCAGGc -3'
miRNA:   3'- acCCGCCa--AGa---UACCCU-UGUUGUUCu -5'
21408 3' -50.3 NC_004812.1 + 45741 0.66 0.994431
Target:  5'- cGGGCGGgcuccgCggagcccgagGGGAgACGGCGAGGg -3'
miRNA:   3'- aCCCGCCaa----Gaua-------CCCU-UGUUGUUCU- -5'
21408 3' -50.3 NC_004812.1 + 70900 0.66 0.996045
Target:  5'- gGGGCGGggaUCUcgcgcggGGGGGCGGgAGGu -3'
miRNA:   3'- aCCCGCCa--AGAua-----CCCUUGUUgUUCu -5'
21408 3' -50.3 NC_004812.1 + 58400 0.66 0.996108
Target:  5'- -aGGCGGccgccgccuggaggCUggGGGGGCGGCGGGAc -3'
miRNA:   3'- acCCGCCaa------------GAuaCCCUUGUUGUUCU- -5'
21408 3' -50.3 NC_004812.1 + 115527 0.66 0.993999
Target:  5'- cGGGCGGggaguacggaggGGGGGCcuCGAGAg -3'
miRNA:   3'- aCCCGCCaagaua------CCCUUGuuGUUCU- -5'
21408 3' -50.3 NC_004812.1 + 156280 0.66 0.994597
Target:  5'- gGGGaCGGgag---GGGGACGAgGAGAc -3'
miRNA:   3'- aCCC-GCCaagauaCCCUUGUUgUUCU- -5'
21408 3' -50.3 NC_004812.1 + 117625 0.66 0.993726
Target:  5'- gGGGCGGcgCgggccgccGGGcGCGGCGGGGu -3'
miRNA:   3'- aCCCGCCaaGaua-----CCCuUGUUGUUCU- -5'
21408 3' -50.3 NC_004812.1 + 97982 0.66 0.993726
Target:  5'- gGGGCGGUgggccGGGAGgcACGGGGg -3'
miRNA:   3'- aCCCGCCAagauaCCCUUguUGUUCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.