miRNA display CGI


Results 1 - 20 of 133 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21408 3' -50.3 NC_004812.1 + 115534 1.1 0.008508
Target:  5'- cUGGGCGGUUCUAUGGGAACAACAAGAg -3'
miRNA:   3'- -ACCCGCCAAGAUACCCUUGUUGUUCU- -5'
21408 3' -50.3 NC_004812.1 + 57250 0.82 0.391824
Target:  5'- gUGGGCGGgcgCUGggggggggGGGGGCGACAAGGg -3'
miRNA:   3'- -ACCCGCCaa-GAUa-------CCCUUGUUGUUCU- -5'
21408 3' -50.3 NC_004812.1 + 18051 0.8 0.515802
Target:  5'- cGGGCGGggauacaggUCUAUGGGAACG--GAGAc -3'
miRNA:   3'- aCCCGCCa--------AGAUACCCUUGUugUUCU- -5'
21408 3' -50.3 NC_004812.1 + 149675 0.79 0.557164
Target:  5'- gGGGCGGggUUGUGGGGggaggggagagaACAAUAGGAg -3'
miRNA:   3'- aCCCGCCaaGAUACCCU------------UGUUGUUCU- -5'
21408 3' -50.3 NC_004812.1 + 24166 0.79 0.56661
Target:  5'- gGGGCGGggUUGUGGGGggaggggagaagaACAAUAGGAg -3'
miRNA:   3'- aCCCGCCaaGAUACCCU-------------UGUUGUUCU- -5'
21408 3' -50.3 NC_004812.1 + 147499 0.76 0.705642
Target:  5'- cGGGCGGcgag--GGGGACGGCGAGGc -3'
miRNA:   3'- aCCCGCCaagauaCCCUUGUUGUUCU- -5'
21408 3' -50.3 NC_004812.1 + 29716 0.74 0.795681
Target:  5'- cUGGGUGGguuUCUAacgucuuuauUGGGGGCAcGCGAGAg -3'
miRNA:   3'- -ACCCGCCa--AGAU----------ACCCUUGU-UGUUCU- -5'
21408 3' -50.3 NC_004812.1 + 21761 0.73 0.848959
Target:  5'- cGGGCGGggUCa--GGGAgugcaGCAGCAGGAc -3'
miRNA:   3'- aCCCGCCa-AGauaCCCU-----UGUUGUUCU- -5'
21408 3' -50.3 NC_004812.1 + 28849 0.73 0.857138
Target:  5'- gGGGCGGgaCUuUGGGGGCGACc--- -3'
miRNA:   3'- aCCCGCCaaGAuACCCUUGUUGuucu -5'
21408 3' -50.3 NC_004812.1 + 17770 0.73 0.857138
Target:  5'- gUGGGCGGgc--GUGGGGGCGagaACGGGGu -3'
miRNA:   3'- -ACCCGCCaagaUACCCUUGU---UGUUCU- -5'
21408 3' -50.3 NC_004812.1 + 27802 0.72 0.872825
Target:  5'- aGGGCGGggCcggGGGGGgAGCGGGGg -3'
miRNA:   3'- aCCCGCCaaGauaCCCUUgUUGUUCU- -5'
21408 3' -50.3 NC_004812.1 + 127013 0.72 0.880319
Target:  5'- aGGGCGGggggggGGGAGCAACGu-- -3'
miRNA:   3'- aCCCGCCaagauaCCCUUGUUGUucu -5'
21408 3' -50.3 NC_004812.1 + 143950 0.72 0.887573
Target:  5'- gGGGCGGg---GUGGGAGgAGCGcgGGAu -3'
miRNA:   3'- aCCCGCCaagaUACCCUUgUUGU--UCU- -5'
21408 3' -50.3 NC_004812.1 + 5008 0.71 0.907847
Target:  5'- aGGGCGGgc----GGGGGCGGCAGGu -3'
miRNA:   3'- aCCCGCCaagauaCCCUUGUUGUUCu -5'
21408 3' -50.3 NC_004812.1 + 116449 0.71 0.925819
Target:  5'- gGGGCGGccgucgcgCUGUGGGucGCGGCGgcGGAu -3'
miRNA:   3'- aCCCGCCaa------GAUACCCu-UGUUGU--UCU- -5'
21408 3' -50.3 NC_004812.1 + 104316 0.71 0.93129
Target:  5'- gGGGaCGGcgcCUccGGGGGCGGCGAGGa -3'
miRNA:   3'- aCCC-GCCaa-GAuaCCCUUGUUGUUCU- -5'
21408 3' -50.3 NC_004812.1 + 10092 0.7 0.9365
Target:  5'- gGGGUGGgggucgCUGUGGGggUGAgAGGu -3'
miRNA:   3'- aCCCGCCaa----GAUACCCuuGUUgUUCu -5'
21408 3' -50.3 NC_004812.1 + 17381 0.7 0.938512
Target:  5'- gGGGUGGUg--GUGGGGGCGgggguggugguggggGCGGGGg -3'
miRNA:   3'- aCCCGCCAagaUACCCUUGU---------------UGUUCU- -5'
21408 3' -50.3 NC_004812.1 + 17327 0.7 0.938512
Target:  5'- gGGGUGGUg--GUGGGGGCGgggguggugguggggGCGGGGg -3'
miRNA:   3'- aCCCGCCAagaUACCCUUGU---------------UGUUCU- -5'
21408 3' -50.3 NC_004812.1 + 16720 0.7 0.941453
Target:  5'- gGGGgGGUUCcguagGGGAugGugAGGGg -3'
miRNA:   3'- aCCCgCCAAGaua--CCCUugUugUUCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.