miRNA display CGI


Results 1 - 20 of 133 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21408 3' -50.3 NC_004812.1 + 56507 0.69 0.96911
Target:  5'- gUGGGaCGGgucgCUAaucucgggGGGGACGACGAGc -3'
miRNA:   3'- -ACCC-GCCaa--GAUa-------CCCUUGUUGUUCu -5'
21408 3' -50.3 NC_004812.1 + 35555 0.7 0.954369
Target:  5'- cGGGCGGggCccggAUagagggaGGGGGCGGCGGGGg -3'
miRNA:   3'- aCCCGCCaaGa---UA-------CCCUUGUUGUUCU- -5'
21408 3' -50.3 NC_004812.1 + 156248 0.69 0.958718
Target:  5'- gGGGCGGgag---GGGGACGGgAGGGg -3'
miRNA:   3'- aCCCGCCaagauaCCCUUGUUgUUCU- -5'
21408 3' -50.3 NC_004812.1 + 6610 0.69 0.962417
Target:  5'- gGGGUGGguggGUGGGGugGGgGGGAa -3'
miRNA:   3'- aCCCGCCaagaUACCCUugUUgUUCU- -5'
21408 3' -50.3 NC_004812.1 + 122198 0.69 0.962417
Target:  5'- gUGGGCGGgcugUCUGggcgccgccccGGGGGCGggcGCGGGGg -3'
miRNA:   3'- -ACCCGCCa---AGAUa----------CCCUUGU---UGUUCU- -5'
21408 3' -50.3 NC_004812.1 + 83836 0.69 0.965879
Target:  5'- aGGGCGcccggccgUCUccgggGGGAGCGGCGGGGg -3'
miRNA:   3'- aCCCGCca------AGAua---CCCUUGUUGUUCU- -5'
21408 3' -50.3 NC_004812.1 + 124260 0.69 0.965879
Target:  5'- aGGGCGGUc--GUGGGGGCGGggacCGGGGc -3'
miRNA:   3'- aCCCGCCAagaUACCCUUGUU----GUUCU- -5'
21408 3' -50.3 NC_004812.1 + 24858 0.69 0.965879
Target:  5'- cGGGCGGcgcggCUGcGGGGGCGuccuCGAGGc -3'
miRNA:   3'- aCCCGCCaa---GAUaCCCUUGUu---GUUCU- -5'
21408 3' -50.3 NC_004812.1 + 155748 0.69 0.965879
Target:  5'- cGGGCGGggCUcgcggccgcGGGGACAcgcGCGGGGc -3'
miRNA:   3'- aCCCGCCaaGAua-------CCCUUGU---UGUUCU- -5'
21408 3' -50.3 NC_004812.1 + 47838 0.7 0.950587
Target:  5'- aGGGCGGUg----GGGGAgGGgGAGAg -3'
miRNA:   3'- aCCCGCCAagauaCCCUUgUUgUUCU- -5'
21408 3' -50.3 NC_004812.1 + 5992 0.7 0.946147
Target:  5'- gGGGUGGUaggCgccgGGGGGCGAgGGGAa -3'
miRNA:   3'- aCCCGCCAa--Gaua-CCCUUGUUgUUCU- -5'
21408 3' -50.3 NC_004812.1 + 5008 0.71 0.907847
Target:  5'- aGGGCGGgc----GGGGGCGGCAGGu -3'
miRNA:   3'- aCCCGCCaagauaCCCUUGUUGUUCu -5'
21408 3' -50.3 NC_004812.1 + 18051 0.8 0.515802
Target:  5'- cGGGCGGggauacaggUCUAUGGGAACG--GAGAc -3'
miRNA:   3'- aCCCGCCa--------AGAUACCCUUGUugUUCU- -5'
21408 3' -50.3 NC_004812.1 + 149675 0.79 0.557164
Target:  5'- gGGGCGGggUUGUGGGGggaggggagagaACAAUAGGAg -3'
miRNA:   3'- aCCCGCCaaGAUACCCU------------UGUUGUUCU- -5'
21408 3' -50.3 NC_004812.1 + 29716 0.74 0.795681
Target:  5'- cUGGGUGGguuUCUAacgucuuuauUGGGGGCAcGCGAGAg -3'
miRNA:   3'- -ACCCGCCa--AGAU----------ACCCUUGU-UGUUCU- -5'
21408 3' -50.3 NC_004812.1 + 21761 0.73 0.848959
Target:  5'- cGGGCGGggUCa--GGGAgugcaGCAGCAGGAc -3'
miRNA:   3'- aCCCGCCa-AGauaCCCU-----UGUUGUUCU- -5'
21408 3' -50.3 NC_004812.1 + 17770 0.73 0.857138
Target:  5'- gUGGGCGGgc--GUGGGGGCGagaACGGGGu -3'
miRNA:   3'- -ACCCGCCaagaUACCCUUGU---UGUUCU- -5'
21408 3' -50.3 NC_004812.1 + 28849 0.73 0.857138
Target:  5'- gGGGCGGgaCUuUGGGGGCGACc--- -3'
miRNA:   3'- aCCCGCCaaGAuACCCUUGUUGuucu -5'
21408 3' -50.3 NC_004812.1 + 27802 0.72 0.872825
Target:  5'- aGGGCGGggCcggGGGGGgAGCGGGGg -3'
miRNA:   3'- aCCCGCCaaGauaCCCUUgUUGUUCU- -5'
21408 3' -50.3 NC_004812.1 + 143950 0.72 0.887573
Target:  5'- gGGGCGGg---GUGGGAGgAGCGcgGGAu -3'
miRNA:   3'- aCCCGCCaagaUACCCUUgUUGU--UCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.