miRNA display CGI


Results 1 - 20 of 133 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21408 3' -50.3 NC_004812.1 + 740 0.68 0.977488
Target:  5'- -cGGCGGgg--GUGGGGGCGGCGcGAc -3'
miRNA:   3'- acCCGCCaagaUACCCUUGUUGUuCU- -5'
21408 3' -50.3 NC_004812.1 + 5008 0.71 0.907847
Target:  5'- aGGGCGGgc----GGGGGCGGCAGGu -3'
miRNA:   3'- aCCCGCCaagauaCCCUUGUUGUUCu -5'
21408 3' -50.3 NC_004812.1 + 5068 0.67 0.985889
Target:  5'- cGGGCGGgagaCUcgGGGGGC--CGGGGu -3'
miRNA:   3'- aCCCGCCaa--GAuaCCCUUGuuGUUCU- -5'
21408 3' -50.3 NC_004812.1 + 5226 0.66 0.992747
Target:  5'- gGGGCGGgggCUcccGGGAGaagcACAAGAc -3'
miRNA:   3'- aCCCGCCaa-GAua-CCCUUgu--UGUUCU- -5'
21408 3' -50.3 NC_004812.1 + 5992 0.7 0.946147
Target:  5'- gGGGUGGUaggCgccgGGGGGCGAgGGGAa -3'
miRNA:   3'- aCCCGCCAa--Gaua-CCCUUGUUgUUCU- -5'
21408 3' -50.3 NC_004812.1 + 6610 0.69 0.962417
Target:  5'- gGGGUGGguggGUGGGGugGGgGGGAa -3'
miRNA:   3'- aCCCGCCaagaUACCCUugUUgUUCU- -5'
21408 3' -50.3 NC_004812.1 + 6651 0.66 0.996412
Target:  5'- gGGGUGGgggagaugGGGGAgAGCGGGGu -3'
miRNA:   3'- aCCCGCCaagaua--CCCUUgUUGUUCU- -5'
21408 3' -50.3 NC_004812.1 + 6816 0.66 0.99664
Target:  5'- cGGGCgucuGGggCUGggugGGGGGCGGCGGc- -3'
miRNA:   3'- aCCCG----CCaaGAUa---CCCUUGUUGUUcu -5'
21408 3' -50.3 NC_004812.1 + 7689 0.67 0.987394
Target:  5'- gUGGGCGGgcgCg--GGGGucgcgccgaguccGCGGCGGGGg -3'
miRNA:   3'- -ACCCGCCaa-GauaCCCU-------------UGUUGUUCU- -5'
21408 3' -50.3 NC_004812.1 + 10092 0.7 0.9365
Target:  5'- gGGGUGGgggucgCUGUGGGggUGAgAGGu -3'
miRNA:   3'- aCCCGCCaa----GAUACCCuuGUUgUUCu -5'
21408 3' -50.3 NC_004812.1 + 10917 0.66 0.995367
Target:  5'- gUGuGGCGGaUCg--GGGGACGAgGGGu -3'
miRNA:   3'- -AC-CCGCCaAGauaCCCUUGUUgUUCu -5'
21408 3' -50.3 NC_004812.1 + 11327 0.67 0.989062
Target:  5'- gGGGcCGGUgggCUgggccgacgguGUGGGcuCGACGGGAg -3'
miRNA:   3'- aCCC-GCCAa--GA-----------UACCCuuGUUGUUCU- -5'
21408 3' -50.3 NC_004812.1 + 11918 0.69 0.962417
Target:  5'- gGGGUGGgg--GUGGG-GCGGCGGGGc -3'
miRNA:   3'- aCCCGCCaagaUACCCuUGUUGUUCU- -5'
21408 3' -50.3 NC_004812.1 + 12828 0.66 0.993726
Target:  5'- gUGGGCGGggaagggCcgAUGGGGcGCGGgAGGAa -3'
miRNA:   3'- -ACCCGCCaa-----Ga-UACCCU-UGUUgUUCU- -5'
21408 3' -50.3 NC_004812.1 + 15922 0.67 0.989062
Target:  5'- cGGGCGGgg--GUGGGGuc-GCGGGGu -3'
miRNA:   3'- aCCCGCCaagaUACCCUuguUGUUCU- -5'
21408 3' -50.3 NC_004812.1 + 16720 0.7 0.941453
Target:  5'- gGGGgGGUUCcguagGGGAugGugAGGGg -3'
miRNA:   3'- aCCCgCCAAGaua--CCCUugUugUUCU- -5'
21408 3' -50.3 NC_004812.1 + 17327 0.7 0.938512
Target:  5'- gGGGUGGUg--GUGGGGGCGgggguggugguggggGCGGGGg -3'
miRNA:   3'- aCCCGCCAagaUACCCUUGU---------------UGUUCU- -5'
21408 3' -50.3 NC_004812.1 + 17381 0.7 0.938512
Target:  5'- gGGGUGGUg--GUGGGGGCGgggguggugguggggGCGGGGg -3'
miRNA:   3'- aCCCGCCAagaUACCCUUGU---------------UGUUCU- -5'
21408 3' -50.3 NC_004812.1 + 17770 0.73 0.857138
Target:  5'- gUGGGCGGgc--GUGGGGGCGagaACGGGGu -3'
miRNA:   3'- -ACCCGCCaagaUACCCUUGU---UGUUCU- -5'
21408 3' -50.3 NC_004812.1 + 18051 0.8 0.515802
Target:  5'- cGGGCGGggauacaggUCUAUGGGAACG--GAGAc -3'
miRNA:   3'- aCCCGCCa--------AGAUACCCUUGUugUUCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.