miRNA display CGI


Results 1 - 20 of 228 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21408 5' -58.7 NC_004812.1 + 47212 0.66 0.829239
Target:  5'- --cCGUGggggaccaacaGCCGCUCCGCCUCCGc -3'
miRNA:   3'- acaGCACaaug-------CGGUGGGGUGGGGGU- -5'
21408 5' -58.7 NC_004812.1 + 1778 0.66 0.825936
Target:  5'- -cUCGgGggGCcgGCCGCUCCGCCCCg- -3'
miRNA:   3'- acAGCaCaaUG--CGGUGGGGUGGGGgu -5'
21408 5' -58.7 NC_004812.1 + 32679 0.66 0.825936
Target:  5'- -cUCGgGggGCcgGCCGCUCCGCCCCg- -3'
miRNA:   3'- acAGCaCaaUG--CGGUGGGGUGGGGgu -5'
21408 5' -58.7 NC_004812.1 + 129833 0.66 0.825936
Target:  5'- cGUacCGaUGcgUGCuCCACCCCGCCCUCu -3'
miRNA:   3'- aCA--GC-ACa-AUGcGGUGGGGUGGGGGu -5'
21408 5' -58.7 NC_004812.1 + 103734 0.66 0.825936
Target:  5'- cGUCG-GUcaccgGCGCUACUUCACCUUCGg -3'
miRNA:   3'- aCAGCaCAa----UGCGGUGGGGUGGGGGU- -5'
21408 5' -58.7 NC_004812.1 + 85563 0.66 0.825936
Target:  5'- -aUCGaGgacaugGCCGCCCCGCCaCCCGa -3'
miRNA:   3'- acAGCaCaaug--CGGUGGGGUGG-GGGU- -5'
21408 5' -58.7 NC_004812.1 + 57066 0.66 0.825936
Target:  5'- ---gGUGcUGCuCCGCCCCGCCCUg- -3'
miRNA:   3'- acagCACaAUGcGGUGGGGUGGGGgu -5'
21408 5' -58.7 NC_004812.1 + 39495 0.66 0.81756
Target:  5'- ---gGUGgcGCGCCGCCCggaggccgCGCCuCCCGg -3'
miRNA:   3'- acagCACaaUGCGGUGGG--------GUGG-GGGU- -5'
21408 5' -58.7 NC_004812.1 + 83556 0.66 0.81756
Target:  5'- cGUCGUGgcccUGCGCagcgACCCgGCCUUCu -3'
miRNA:   3'- aCAGCACa---AUGCGg---UGGGgUGGGGGu -5'
21408 5' -58.7 NC_004812.1 + 23539 0.66 0.81756
Target:  5'- cGUCG----GCGCCAUCgCCGCCgCCGg -3'
miRNA:   3'- aCAGCacaaUGCGGUGG-GGUGGgGGU- -5'
21408 5' -58.7 NC_004812.1 + 8594 0.66 0.81756
Target:  5'- ---gGUGgcGCGCCGCCCggaggccgCGCCuCCCGg -3'
miRNA:   3'- acagCACaaUGCGGUGGG--------GUGG-GGGU- -5'
21408 5' -58.7 NC_004812.1 + 12724 0.66 0.81756
Target:  5'- --------cACGCUuccccaccGCCCCACCCCCAc -3'
miRNA:   3'- acagcacaaUGCGG--------UGGGGUGGGGGU- -5'
21408 5' -58.7 NC_004812.1 + 25589 0.66 0.81756
Target:  5'- --------aGCGCCGCCCCGCCUCg- -3'
miRNA:   3'- acagcacaaUGCGGUGGGGUGGGGgu -5'
21408 5' -58.7 NC_004812.1 + 54015 0.66 0.815015
Target:  5'- cGUCGUacgcgcacGUgccuccaGCCGacaaaacacaacauCCCCGCCCCCAc -3'
miRNA:   3'- aCAGCA--------CAaug----CGGU--------------GGGGUGGGGGU- -5'
21408 5' -58.7 NC_004812.1 + 22619 0.66 0.814164
Target:  5'- cGUCGUcgauaaaauacAUGCC-CCCCGCCaCCCGg -3'
miRNA:   3'- aCAGCAcaa--------UGCGGuGGGGUGG-GGGU- -5'
21408 5' -58.7 NC_004812.1 + 44338 0.66 0.809022
Target:  5'- gGUgGUGggcGgGCUggugGCCCCGCCCaCCAa -3'
miRNA:   3'- aCAgCACaa-UgCGG----UGGGGUGGG-GGU- -5'
21408 5' -58.7 NC_004812.1 + 16476 0.66 0.809022
Target:  5'- gGUCGUGUUu--CCGCCCCcguguCCgCCAc -3'
miRNA:   3'- aCAGCACAAugcGGUGGGGu----GGgGGU- -5'
21408 5' -58.7 NC_004812.1 + 132467 0.66 0.809022
Target:  5'- --cCGUuucGCGCCcccccuucCCCCACCCCCGc -3'
miRNA:   3'- acaGCAcaaUGCGGu-------GGGGUGGGGGU- -5'
21408 5' -58.7 NC_004812.1 + 34038 0.66 0.80816
Target:  5'- gUGUCGcGgc-CGCCGCgcuccccUCCGCCCCCc -3'
miRNA:   3'- -ACAGCaCaauGCGGUG-------GGGUGGGGGu -5'
21408 5' -58.7 NC_004812.1 + 3137 0.66 0.80816
Target:  5'- gUGUCGcGgc-CGCCGCgcuccccUCCGCCCCCc -3'
miRNA:   3'- -ACAGCaCaauGCGGUG-------GGGUGGGGGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.