miRNA display CGI


Results 1 - 20 of 491 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21409 3' -53.8 NC_004812.1 + 156237 0.65 0.973569
Target:  5'- gCCGCgggaugCGCCggcggcgGCCGAGAGugAgGGUg -3'
miRNA:   3'- gGGCGa-----GCGG-------CGGCUUUUugUgUCAg -5'
21409 3' -53.8 NC_004812.1 + 125336 0.65 0.973569
Target:  5'- gCCGCgggaugCGCCggcggcgGCCGAGAGugAgGGUg -3'
miRNA:   3'- gGGCGa-----GCGG-------CGGCUUUUugUgUCAg -5'
21409 3' -53.8 NC_004812.1 + 47774 0.65 0.973569
Target:  5'- uCCCGuCUCGCgGCCcgagugaccGGAGGGCGugcgucgccccucCGGUCa -3'
miRNA:   3'- -GGGC-GAGCGgCGG---------CUUUUUGU-------------GUCAG- -5'
21409 3' -53.8 NC_004812.1 + 117078 0.66 0.962892
Target:  5'- gCCCGCUccccCGCCccucgcguccauuaCCGGGAGGCGCGGcCu -3'
miRNA:   3'- -GGGCGA----GCGGc-------------GGCUUUUUGUGUCaG- -5'
21409 3' -53.8 NC_004812.1 + 144695 0.66 0.962892
Target:  5'- cCCCGC-CGCCccaccccaccccaucGCCGAGGucGCGCAcGUg -3'
miRNA:   3'- -GGGCGaGCGG---------------CGGCUUUu-UGUGU-CAg -5'
21409 3' -53.8 NC_004812.1 + 94480 0.66 0.957881
Target:  5'- cCUCGCcggcgguuUCGCgGCCGggGccagcGCGCGGUUc -3'
miRNA:   3'- -GGGCG--------AGCGgCGGCuuUu----UGUGUCAG- -5'
21409 3' -53.8 NC_004812.1 + 133939 0.66 0.961505
Target:  5'- gUCCGCUCGgggcucCCGCCGGccccGGGcACGCGGg- -3'
miRNA:   3'- -GGGCGAGC------GGCGGCU----UUU-UGUGUCag -5'
21409 3' -53.8 NC_004812.1 + 56001 0.66 0.962892
Target:  5'- gCgCGCUCgaagugcucggcccgGCgGCCGAAGAGCGcCAGcUCg -3'
miRNA:   3'- -GgGCGAG---------------CGgCGGCUUUUUGU-GUC-AG- -5'
21409 3' -53.8 NC_004812.1 + 154127 0.66 0.957881
Target:  5'- gCCCGCgaggcCGCCGCCGcc-GGCGCc--- -3'
miRNA:   3'- -GGGCGa----GCGGCGGCuuuUUGUGucag -5'
21409 3' -53.8 NC_004812.1 + 44071 0.66 0.957881
Target:  5'- cCCCGCUCGgCGggcgcCCGcAGGAcCGCGGUg -3'
miRNA:   3'- -GGGCGAGCgGC-----GGC-UUUUuGUGUCAg -5'
21409 3' -53.8 NC_004812.1 + 71264 0.66 0.961153
Target:  5'- gCCgGCUcggggcgCGCCGCCGAAAGuCGCcGcCa -3'
miRNA:   3'- -GGgCGA-------GCGGCGGCUUUUuGUGuCaG- -5'
21409 3' -53.8 NC_004812.1 + 49153 0.66 0.957881
Target:  5'- gCUGCUCGCCaaCGGAAAcguguACGCGGa- -3'
miRNA:   3'- gGGCGAGCGGcgGCUUUU-----UGUGUCag -5'
21409 3' -53.8 NC_004812.1 + 99047 0.66 0.961153
Target:  5'- aCCGcCUCGaCCGUCGAGAcAAUcgucucgACGGUCc -3'
miRNA:   3'- gGGC-GAGC-GGCGGCUUU-UUG-------UGUCAG- -5'
21409 3' -53.8 NC_004812.1 + 138732 0.66 0.961505
Target:  5'- gCCCGCggcgUGCCgGCCGGucgccccCGCGGUg -3'
miRNA:   3'- -GGGCGa---GCGG-CGGCUuuuu---GUGUCAg -5'
21409 3' -53.8 NC_004812.1 + 146170 0.66 0.961505
Target:  5'- cCCUGCg-GCuCGCCGAc--ACAgAGUCg -3'
miRNA:   3'- -GGGCGagCG-GCGGCUuuuUGUgUCAG- -5'
21409 3' -53.8 NC_004812.1 + 137571 0.66 0.957881
Target:  5'- aCCCGUacaCGCCGUCGguGGACAUAu-- -3'
miRNA:   3'- -GGGCGa--GCGGCGGCuuUUUGUGUcag -5'
21409 3' -53.8 NC_004812.1 + 75114 0.66 0.961153
Target:  5'- gCCGCg-GCCGCCGGGAucgccgcGACccGCAGg- -3'
miRNA:   3'- gGGCGagCGGCGGCUUU-------UUG--UGUCag -5'
21409 3' -53.8 NC_004812.1 + 24511 0.66 0.957881
Target:  5'- cCCCGC--GCCGCgGggGcu-GCGGUCg -3'
miRNA:   3'- -GGGCGagCGGCGgCuuUuugUGUCAG- -5'
21409 3' -53.8 NC_004812.1 + 29675 0.66 0.961505
Target:  5'- cCCCGCcgaCGCCGC-GAGAAACcgcCAGg- -3'
miRNA:   3'- -GGGCGa--GCGGCGgCUUUUUGu--GUCag -5'
21409 3' -53.8 NC_004812.1 + 129131 0.66 0.961153
Target:  5'- -gCGCUUGCgCGCCGGcgGGCGCGcggcgccgcccgcGUCu -3'
miRNA:   3'- ggGCGAGCG-GCGGCUuuUUGUGU-------------CAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.