miRNA display CGI


Results 1 - 20 of 491 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21409 3' -53.8 NC_004812.1 + 190 0.71 0.819181
Target:  5'- uUCGCgcgcgCGCCGCCGggGGagggcccgggucGCGCAGcCc -3'
miRNA:   3'- gGGCGa----GCGGCGGCuuUU------------UGUGUCaG- -5'
21409 3' -53.8 NC_004812.1 + 278 0.74 0.643031
Target:  5'- uCCCGCgcgcgcucCGCCGCCGuccggccgcgcccGAGAGCGCGGg- -3'
miRNA:   3'- -GGGCGa-------GCGGCGGC-------------UUUUUGUGUCag -5'
21409 3' -53.8 NC_004812.1 + 612 0.67 0.945632
Target:  5'- aCCCGaucCGCCGCgCGAGggGAGgACAGcCg -3'
miRNA:   3'- -GGGCga-GCGGCG-GCUU--UUUgUGUCaG- -5'
21409 3' -53.8 NC_004812.1 + 710 0.67 0.941079
Target:  5'- cUCCGUcggcgUCGgCGCCG----GCGCGGUCg -3'
miRNA:   3'- -GGGCG-----AGCgGCGGCuuuuUGUGUCAG- -5'
21409 3' -53.8 NC_004812.1 + 806 0.71 0.810434
Target:  5'- uUCCGCccacgGCCgGCCGGGAAGCGguGUCc -3'
miRNA:   3'- -GGGCGag---CGG-CGGCUUUUUGUguCAG- -5'
21409 3' -53.8 NC_004812.1 + 1172 0.69 0.889265
Target:  5'- cCCCGCucccUCGUCGCCGu----CGCcGUCg -3'
miRNA:   3'- -GGGCG----AGCGGCGGCuuuuuGUGuCAG- -5'
21409 3' -53.8 NC_004812.1 + 1265 0.69 0.895975
Target:  5'- gCCCGUUgGuCCGCCGGccgcGGGCggGCGGUCc -3'
miRNA:   3'- -GGGCGAgC-GGCGGCUu---UUUG--UGUCAG- -5'
21409 3' -53.8 NC_004812.1 + 1339 0.67 0.945632
Target:  5'- gUCCGCgggCGguCCGCCGGAAGGC-CGGc- -3'
miRNA:   3'- -GGGCGa--GC--GGCGGCUUUUUGuGUCag -5'
21409 3' -53.8 NC_004812.1 + 1484 0.68 0.908692
Target:  5'- cCCCGC-CGCCGCgGAGcca-ACcGUCg -3'
miRNA:   3'- -GGGCGaGCGGCGgCUUuuugUGuCAG- -5'
21409 3' -53.8 NC_004812.1 + 2040 0.67 0.95403
Target:  5'- cCUCGgUCGgCGgCGggGGGCGCGGg- -3'
miRNA:   3'- -GGGCgAGCgGCgGCuuUUUGUGUCag -5'
21409 3' -53.8 NC_004812.1 + 2159 0.68 0.914694
Target:  5'- cCUCGCUCGCC-CCGGGAcGCcCGGcCc -3'
miRNA:   3'- -GGGCGAGCGGcGGCUUUuUGuGUCaG- -5'
21409 3' -53.8 NC_004812.1 + 2222 0.72 0.735303
Target:  5'- gCCCgGCcCGCCGCCG-AGGugGgGGUCu -3'
miRNA:   3'- -GGG-CGaGCGGCGGCuUUUugUgUCAG- -5'
21409 3' -53.8 NC_004812.1 + 2514 0.66 0.964907
Target:  5'- gUCgGCggCGCgGCCGucGAGCGCGGg- -3'
miRNA:   3'- -GGgCGa-GCGgCGGCuuUUUGUGUCag -5'
21409 3' -53.8 NC_004812.1 + 2594 0.7 0.83615
Target:  5'- gCCGC-CGCCGCCGAc-GGCAcCGGa- -3'
miRNA:   3'- gGGCGaGCGGCGGCUuuUUGU-GUCag -5'
21409 3' -53.8 NC_004812.1 + 2636 0.66 0.969307
Target:  5'- cCCCGCgagaccugCGCCGUcugcacggagcgcauCGAcGAGGCGCAGcUCu -3'
miRNA:   3'- -GGGCGa-------GCGGCG---------------GCU-UUUUGUGUC-AG- -5'
21409 3' -53.8 NC_004812.1 + 2705 0.68 0.925974
Target:  5'- gCCCGaagaCGCgGCCGGAGgccAGCACGG-Cg -3'
miRNA:   3'- -GGGCga--GCGgCGGCUUU---UUGUGUCaG- -5'
21409 3' -53.8 NC_004812.1 + 2965 0.66 0.968092
Target:  5'- cCCUGCgCGCCcagcGCCGAGAcgucgggcGGC-CGGUCc -3'
miRNA:   3'- -GGGCGaGCGG----CGGCUUU--------UUGuGUCAG- -5'
21409 3' -53.8 NC_004812.1 + 3260 0.68 0.931251
Target:  5'- gCCCGCgccccCGCCGCcCGAgGAGACGCc--- -3'
miRNA:   3'- -GGGCGa----GCGGCG-GCU-UUUUGUGucag -5'
21409 3' -53.8 NC_004812.1 + 3471 0.68 0.914694
Target:  5'- gCCCGCgcccCGCCGCCGAGcccccCGCGc-- -3'
miRNA:   3'- -GGGCGa---GCGGCGGCUUuuu--GUGUcag -5'
21409 3' -53.8 NC_004812.1 + 3623 0.66 0.961153
Target:  5'- -gCGCUUGCgCGCCGGcgGGCGCGcggcgccgcccgcGUCu -3'
miRNA:   3'- ggGCGAGCG-GCGGCUuuUUGUGU-------------CAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.