miRNA display CGI


Results 1 - 20 of 491 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21409 3' -53.8 NC_004812.1 + 114439 1.11 0.004024
Target:  5'- gCCCGCUCGCCGCCGAAAAACACAGUCc -3'
miRNA:   3'- -GGGCGAGCGGCGGCUUUUUGUGUCAG- -5'
21409 3' -53.8 NC_004812.1 + 108733 0.86 0.158033
Target:  5'- --aGCUCGCCGCCGAGAGGgGCGGUUa -3'
miRNA:   3'- gggCGAGCGGCGGCUUUUUgUGUCAG- -5'
21409 3' -53.8 NC_004812.1 + 71009 0.83 0.224778
Target:  5'- gCCCGCUCGCCGCCGcgGGGC-CGG-Cg -3'
miRNA:   3'- -GGGCGAGCGGCGGCuuUUUGuGUCaG- -5'
21409 3' -53.8 NC_004812.1 + 23625 0.83 0.241889
Target:  5'- gUCCGCgcgGCCGCCGggGcGCGCGGUCc -3'
miRNA:   3'- -GGGCGag-CGGCGGCuuUuUGUGUCAG- -5'
21409 3' -53.8 NC_004812.1 + 149133 0.83 0.241889
Target:  5'- gUCCGCgcgGCCGCCGggGcGCGCGGUCc -3'
miRNA:   3'- -GGGCGag-CGGCGGCuuUuUGUGUCAG- -5'
21409 3' -53.8 NC_004812.1 + 85405 0.82 0.272801
Target:  5'- gCCCGCUCGCCGCCu---GGCGCGGcCc -3'
miRNA:   3'- -GGGCGAGCGGCGGcuuuUUGUGUCaG- -5'
21409 3' -53.8 NC_004812.1 + 89404 0.81 0.313984
Target:  5'- gCCCGCgggCGCCGCCGc----CGCGGUCa -3'
miRNA:   3'- -GGGCGa--GCGGCGGCuuuuuGUGUCAG- -5'
21409 3' -53.8 NC_004812.1 + 27462 0.78 0.408997
Target:  5'- gCCGCgcacguucagCGCCGCCccggcgcGGAGGGCGCAGUCg -3'
miRNA:   3'- gGGCGa---------GCGGCGG-------CUUUUUGUGUCAG- -5'
21409 3' -53.8 NC_004812.1 + 83277 0.78 0.418644
Target:  5'- gCCGCUCGCCGCacgCGGAuccAGGCGCAGg- -3'
miRNA:   3'- gGGCGAGCGGCG---GCUU---UUUGUGUCag -5'
21409 3' -53.8 NC_004812.1 + 128132 0.78 0.436531
Target:  5'- cCCCGCcCGCCGCCGGGAugGACcGCGGa- -3'
miRNA:   3'- -GGGCGaGCGGCGGCUUU--UUG-UGUCag -5'
21409 3' -53.8 NC_004812.1 + 119668 0.77 0.464166
Target:  5'- uCCC-CUCGCCGCCcuacggcGCGCAGUCg -3'
miRNA:   3'- -GGGcGAGCGGCGGcuuuu--UGUGUCAG- -5'
21409 3' -53.8 NC_004812.1 + 135987 0.77 0.464166
Target:  5'- gUCGgaCGCCGCCcccGAGACGCAGUCg -3'
miRNA:   3'- gGGCgaGCGGCGGcu-UUUUGUGUCAG- -5'
21409 3' -53.8 NC_004812.1 + 150569 0.77 0.464166
Target:  5'- uCCC-CUCGCCGCCcuacggcGCGCAGUCg -3'
miRNA:   3'- -GGGcGAGCGGCGGcuuuu--UGUGUCAG- -5'
21409 3' -53.8 NC_004812.1 + 58306 0.77 0.483087
Target:  5'- aCCCGCgCGCCGCCGGAgccccggacgacGAGCACGu-- -3'
miRNA:   3'- -GGGCGaGCGGCGGCUU------------UUUGUGUcag -5'
21409 3' -53.8 NC_004812.1 + 60428 0.76 0.532899
Target:  5'- aCCCGCuccggcgcgaccaccUCGCCGCCGcccucgaaccagcgGAAGgcgGCGCGGUCg -3'
miRNA:   3'- -GGGCG---------------AGCGGCGGC--------------UUUU---UGUGUCAG- -5'
21409 3' -53.8 NC_004812.1 + 35636 0.76 0.541889
Target:  5'- gCCCGCUCGCC-CgGGAGGAgACAGa- -3'
miRNA:   3'- -GGGCGAGCGGcGgCUUUUUgUGUCag -5'
21409 3' -53.8 NC_004812.1 + 59152 0.76 0.541889
Target:  5'- gCCGCUggCGCCGuCCGAcgGGCGCAGg- -3'
miRNA:   3'- gGGCGA--GCGGC-GGCUuuUUGUGUCag -5'
21409 3' -53.8 NC_004812.1 + 4735 0.76 0.541889
Target:  5'- gCCCGCUCGCC-CgGGAGGAgACAGa- -3'
miRNA:   3'- -GGGCGAGCGGcGgCUUUUUgUGUCag -5'
21409 3' -53.8 NC_004812.1 + 77160 0.76 0.541889
Target:  5'- cCCCGC-CGCCGCgCGGAAGGCGCc--- -3'
miRNA:   3'- -GGGCGaGCGGCG-GCUUUUUGUGucag -5'
21409 3' -53.8 NC_004812.1 + 152581 0.76 0.551936
Target:  5'- gCCGC-CGCCGCCGAGugccuCACGGcCu -3'
miRNA:   3'- gGGCGaGCGGCGGCUUuuu--GUGUCaG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.