miRNA display CGI


Results 1 - 20 of 491 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21409 3' -53.8 NC_004812.1 + 38091 0.74 0.613159
Target:  5'- cCCCGCgCGUC-CCGAA--ACGCGGUCg -3'
miRNA:   3'- -GGGCGaGCGGcGGCUUuuUGUGUCAG- -5'
21409 3' -53.8 NC_004812.1 + 152820 0.75 0.592616
Target:  5'- gCCGCcgUCGCCGCCGugc-GCGCcGUCa -3'
miRNA:   3'- gGGCG--AGCGGCGGCuuuuUGUGuCAG- -5'
21409 3' -53.8 NC_004812.1 + 140310 0.75 0.592616
Target:  5'- cCCCGCUCGuCCGCC-----AUGCGGUCu -3'
miRNA:   3'- -GGGCGAGC-GGCGGcuuuuUGUGUCAG- -5'
21409 3' -53.8 NC_004812.1 + 96912 0.75 0.599796
Target:  5'- gCCGCUCGCCGCCGcucucccucgcgcGCGCGG-Ca -3'
miRNA:   3'- gGGCGAGCGGCGGCuuuu---------UGUGUCaG- -5'
21409 3' -53.8 NC_004812.1 + 69486 0.75 0.601849
Target:  5'- gCgCGC-CGCCGCCGAAcccagagGGACGgGGUCg -3'
miRNA:   3'- -GgGCGaGCGGCGGCUU-------UUUGUgUCAG- -5'
21409 3' -53.8 NC_004812.1 + 83479 0.75 0.602876
Target:  5'- gCCCGCUCgggGUCGUCGggGAGCGCGa-- -3'
miRNA:   3'- -GGGCGAG---CGGCGGCuuUUUGUGUcag -5'
21409 3' -53.8 NC_004812.1 + 108027 0.75 0.602876
Target:  5'- gCCGCgUCGCCGCCGGuggAGGugACGG-Cg -3'
miRNA:   3'- gGGCG-AGCGGCGGCU---UUUugUGUCaG- -5'
21409 3' -53.8 NC_004812.1 + 116537 0.75 0.602876
Target:  5'- gCCGCcCGCCGCCcgGAAAAGCGCAc-- -3'
miRNA:   3'- gGGCGaGCGGCGG--CUUUUUGUGUcag -5'
21409 3' -53.8 NC_004812.1 + 32410 0.74 0.613159
Target:  5'- cCUCGgUCGCCGCCGc-GGGCGCGGcCg -3'
miRNA:   3'- -GGGCgAGCGGCGGCuuUUUGUGUCaG- -5'
21409 3' -53.8 NC_004812.1 + 77172 0.75 0.586473
Target:  5'- gCCCGCggcggcgccgucccCGCCGCCGGGcucGAACGCGGcCu -3'
miRNA:   3'- -GGGCGa-------------GCGGCGGCUU---UUUGUGUCaG- -5'
21409 3' -53.8 NC_004812.1 + 112997 0.75 0.57219
Target:  5'- gCCGCg-GCCGCCGAggcagAGGACGCAGa- -3'
miRNA:   3'- gGGCGagCGGCGGCU-----UUUUGUGUCag -5'
21409 3' -53.8 NC_004812.1 + 100371 0.75 0.57219
Target:  5'- uCCgGCgccCGCCGCCGggGGGCGCGa-- -3'
miRNA:   3'- -GGgCGa--GCGGCGGCuuUUUGUGUcag -5'
21409 3' -53.8 NC_004812.1 + 149133 0.83 0.241889
Target:  5'- gUCCGCgcgGCCGCCGggGcGCGCGGUCc -3'
miRNA:   3'- -GGGCGag-CGGCGGCuuUuUGUGUCAG- -5'
21409 3' -53.8 NC_004812.1 + 89404 0.81 0.313984
Target:  5'- gCCCGCgggCGCCGCCGc----CGCGGUCa -3'
miRNA:   3'- -GGGCGa--GCGGCGGCuuuuuGUGUCAG- -5'
21409 3' -53.8 NC_004812.1 + 27462 0.78 0.408997
Target:  5'- gCCGCgcacguucagCGCCGCCccggcgcGGAGGGCGCAGUCg -3'
miRNA:   3'- gGGCGa---------GCGGCGG-------CUUUUUGUGUCAG- -5'
21409 3' -53.8 NC_004812.1 + 83277 0.78 0.418644
Target:  5'- gCCGCUCGCCGCacgCGGAuccAGGCGCAGg- -3'
miRNA:   3'- gGGCGAGCGGCG---GCUU---UUUGUGUCag -5'
21409 3' -53.8 NC_004812.1 + 135987 0.77 0.464166
Target:  5'- gUCGgaCGCCGCCcccGAGACGCAGUCg -3'
miRNA:   3'- gGGCgaGCGGCGGcu-UUUUGUGUCAG- -5'
21409 3' -53.8 NC_004812.1 + 119668 0.77 0.464166
Target:  5'- uCCC-CUCGCCGCCcuacggcGCGCAGUCg -3'
miRNA:   3'- -GGGcGAGCGGCGGcuuuu--UGUGUCAG- -5'
21409 3' -53.8 NC_004812.1 + 4735 0.76 0.541889
Target:  5'- gCCCGCUCGCC-CgGGAGGAgACAGa- -3'
miRNA:   3'- -GGGCGAGCGGcGgCUUUUUgUGUCag -5'
21409 3' -53.8 NC_004812.1 + 152581 0.76 0.551936
Target:  5'- gCCGC-CGCCGCCGAGugccuCACGGcCu -3'
miRNA:   3'- gGGCGaGCGGCGGCUUuuu--GUGUCaG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.